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[177754_at]

Description R160.3 /REP_DB=WormBase Gene ID /WP=CE19553 /TR=Q9TZD5 /GB=AAC68736.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_total > 93      4grp_total > 18      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 79.9
(-2.2)
P 		76.5
(-2.3)
P 		63.1
(-3)
P 		183
(3)
P 		120
B 56.4
(-3)
P 		105.4
(3)
P 		83.3
(0.3)
P 		66.6
(-1.8)
P 		49
C 38.2
(-3)
P 		100.2
(-0.2)
P 		47
(-2.6)
P 		169.2
(3)
P 		131
avr 58.2
(-3) 		94
(-0.4) 		64.5
(-2.5) 		139.6
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 75.6
(-1.5)
P 		74.7
(-1.6)
P 		83.7
(-0.9)
P 		58
(-3)
P 		130.7
(3)
P 		69.3
(-2.1)
P 		73
B 89.9
(2.6)
P 		35.2
(-3)
P 		92.3
(2.8)
P 		75
(1)
P 		94.3
(3)
P 		55.5
(-0.9)
P 		59
C 57.7
(-3)
P 		104.8
(3)
P 		60.9
(-2.6)
M 		78.3
(-0.4)
P 		66.9
(-1.8)
P 		64.5
(-2.1)
P 		47
avr 74.4
(-1) 		71.6
(-1.5) 		79
(-0.2) 		70.4
(-1.7) 		97.3
(3) 		63.1
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 29.1
(3)
P 		16.6
(-3)
P 		16.5
(-3)
P 		26.8
(1.9)
P 		13
B 18
(-1.1)
P 		26
(3)
P 		19.3
(-0.4)
P 		14.2
(-3)
P 		12
C 12.6
(-3)
P 		28.8
(3)
P 		16.4
(-1.6)
P 		28.5
(2.9)
P 		16
avr 19.9
(-0.7) 		23.8
(3) 		17.4
(-3) 		23.2
(2.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.9
(-3)
P 		26.6
(-0)
P 		18.2
(-2)
P 		14.7
(-2.8)
P 		39.5
(3)
P 		16.9
(-2.3)
P 		26
B 31.3
(1.4)
P 		11.7
(-3)
P 		22.4
(-0.6)
P 		19.9
(-1.2)
P 		38.3
(3)
P 		20.7
(-1)
P 		27
C 21.4
(-0.9)
P 		32
(3)
P 		15.5
(-3)
M 		15.7
(-2.9)
P 		21.7
(-0.7)
P 		21.6
(-0.8)
P 		17
avr 22.2
(-1) 		23.4
(-0.6) 		18.7
(-2.3) 		16.8
(-3) 		33.2
(3) 		19.7
(-1.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16299
Sequence Type Exemplar sequence
Representative Public ID R160.3 NCBI
Target Description R160.3 /REP_DB=WormBase Gene ID /WP=CE19553 /TR=Q9TZD5 /GB=AAC68736.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076350 NCBI Caenorhabditis elegans R160.3 (R160.3) mRNA, complete cds. 11/11 None
SNAP00000044066 ENSEMBL cdna:SNAP chromosome:CEL140:X:4365523:4366291:-1 11/11 None
GENEFINDER00000044081 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4365523:4367485:-1 11/11 None
R160.3 ENSEMBL cdna:known chromosome:CEL140:X:4365523:4366291:-1 gene:R160.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4365523-4366292(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R160.3
Entrez Gene 187912 Entrez gene
SwissProt Q9TZD5 EMBL-EBI
WormBase CE19553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68736 Hypothetical protein R160.3 [Caenorhabditis elegans] ref|NP_508751.1| R160.3 [Caenorhabditis elegans] 1.0E-79
blast AAC68736 Hypothetical protein R160.3 [Caenorhabditis elegans] ref|NP_508751.1| R160.3 [Caenorhabditis elegans] 7.0E-79
blast AAC68735 Hypothetical protein R160.4 [Caenorhabditis elegans] ref|NP_508752.1| R160.4 [Caenorhabditis elegans] 3.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508751.1 2 4-21,64-86
R160.3 2 4-21,64-86
SNAP00000044066 2 4-21,64-86
GENEFINDER00000044081 3 15-34,134-156,200-222
Sequence
Target Sequence 
>C. ELEGANS:177754_AT
gttagcgactgccgggatcatatgtatcctgatgttgattaattgtggactctttgtgaa
aacagaccaaattgaggccggaaataccagcagcattacggaaaagtctacagacactgc
aacgttggatgtgtctatcgaagaagttggtgctacttacgattgtttcgcttggtggca
agaaacgggatttctcttctgggcatcgctttgcggaattgtattgacaatcctgatgta
cctcttcaccagccgccttatcaaagaggtccgtagaatgaagaaagaaagcaagcttct
catccgtcttaggaactacttctcggacttcctcgctgacccgtgcagttcgagaaacgc
ctacgcaaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAGCGACTGCCGGGATCATATGT 193 447 18 Antisense
TGAGGCCGGAAATACCAGCAGCATT 202 561 90 Antisense
GTTGGTGCTACTTACGATTGTTTCG 143 437 163 Antisense
AGAAACGGGATTTCTCTTCTGGGCA 675 71 198 Antisense
TCTTCTGGGCATCGCTTTGCGGAAT 35 615 212 Antisense
TGACAATCCTGATGTACCTCTTCAC 462 571 242 Antisense
TTCACCAGCCGCCTTATCAAAGAGG 411 687 262 Antisense
CAAGCTTCTCATCCGTCTTAGGAAC 144 185 309 Antisense
TAGGAACTACTTCTCGGACTTCCTC 626 221 327 Antisense
CTCGCTGACCCGTGCAGTTCGAGAA 668 233 349 Antisense
GTTCGAGAAACGCCTACGCAAAAGC 570 441 365 Antisense
Sequence Source Affymetrix Proprietary Database