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[177753_at]

Description C01A2.6 /REP_DB=WormBase Gene ID /WP=CE07788 /TR=O02210 /GB=CAB02701.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 11.2
(-2.4)
A 		28.6
(3)
A 		14.5
(-1.4)
A 		9.3
(-3)
A 		19
B 16.5
(3)
A 		14.1
(1.7)
A 		10
(-0.6)
A 		5.7
(-3)
A 		11
C 35.3
(-0.8)
A 		50.5
(3)
A 		26.2
(-3)
A 		37.9
(-0.1)
A 		24
avr 21
(-1.3) 		31.1
(3) 		16.9
(-3) 		17.6
(-2.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 32.1
(3)
A 		29.4
(2.3)
A 		10
(-2.3)
A 		32.2
(3)
A 		6.9
(-3)
A 		10.6
(-2.1)
A 		25
B 36.3
(0.9)
A 		52.1
(3)
A 		11.6
(-2.4)
A 		13.8
(-2.1)
A 		7.3
(-2.9)
A 		6.7
(-3)
A 		45
C 44.9
(1.4)
A 		59
(3)
A 		15.9
(-1.9)
A 		10.4
(-2.5)
A 		9.9
(-2.6)
A 		6.2
(-3)
A 		53
avr 37.8
(1.6) 		46.8
(3) 		12.5
(-2.3) 		18.8
(-1.3) 		8
(-3) 		7.8
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.1
(0.4)
A 		6.2
(3)
A 		3.8
(-0)
A 		1.4
(-3)
A 		5
B 5.3
(3)
A 		3.5
(0.4)
A 		2.3
(-1.4)
A 		1.2
(-3)
A 		4
C 11.7
(0.9)
A 		14.5
(3)
A 		9.1
(-1)
A 		6.4
(-3)
A 		8
avr 7
(1.7) 		8.1
(3) 		5.1
(-0.5) 		3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.9
(-0.3)
A 		10.4
(3)
A 		2.2
(-2.9)
A 		8.2
(1.4)
A 		2.1
(-3)
A 		2.6
(-2.6)
A 		8
B 12.6
(1.1)
A 		17.4
(3)
A 		2.8
(-2.9)
A 		3.6
(-2.6)
A 		3
(-2.8)
A 		2.5
(-3)
A 		15
C 16.7
(2.5)
A 		18
(3)
A 		4
(-2.3)
A 		2.1
(-3)
A 		3.2
(-2.6)
A 		2.1
(-3)
A 		16
avr 11.7
(1.3) 		15.3
(3) 		3
(-2.7) 		4.6
(-2) 		2.8
(-2.8) 		2.4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.802
Sequence Type Exemplar sequence
Representative Public ID C01A2.6 NCBI
Target Description C01A2.6 /REP_DB=WormBase Gene ID /WP=CE07788 /TR=O02210 /GB=CAB02701.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060953 NCBI Caenorhabditis elegans C01A2.6 (C01A2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000025743 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13384207:13392210:1 9/11 None
SNAP00000025715 ENSEMBL cdna:SNAP chromosome:CEL140:I:13390208:13392210:1 9/11 None
C01A2.6 ENSEMBL cdna:known chromosome:CEL140:I:13391280:13392414:1 gene:C01A2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13391210-13392345(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01A2.6
Entrez Gene 182051 Entrez gene
SwissProt O02210 EMBL-EBI
WormBase CE07788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02701 Hypothetical protein C01A2.6 [Caenorhabditis elegans] ref|NP_493354.1| C01A2.6 [Caenorhabditis elegans] 1.0E-131
blast CAB02701 Hypothetical protein C01A2.6 [Caenorhabditis elegans] ref|NP_493354.1| C01A2.6 [Caenorhabditis elegans] 6.0E-82
blast CAB02701 Hypothetical protein C01A2.6 [Caenorhabditis elegans] ref|NP_493354.1| C01A2.6 [Caenorhabditis elegans] 9.0E-81
Sequence
Target Sequence 
>C. ELEGANS:177753_AT
ccccgatagcgcttcaggagacgtcacgtcaagagatacggagcatcctcctcgccagaa
gaaatatctttccagcacctcagatcttgtgaagctgcctccaagcaaggcacaaattct
tgaagcttgggaaaatggagccgaaccttggcaatctacctactcggaacgattagagga
cgagaaggacttctattctgtttgcgtgtacgatacaaacccacccgacgatgaatggcg
ctggaatggaagactggacttctcgcttcacgcggatcccgatttcattccaccatggtg
caccgtgtggacaaaggagcaggaggacgatcttttgaagaaagagagattttattcacg
ttttgaatcaatcaacgttattcatttttctacacttgttctcgtcattttccggtttcc
atgtggtcccccgtctctcccatccagctttatttatttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCGATAGCGCTTCAGGAGACGTC 628 261 147 Antisense
AAGAGATACGGAGCATCCTCCTCGC 132 155 177 Antisense
CATCCTCCTCGCCAGAAGAAATATC 501 211 190 Antisense
CTTTCCAGCACCTCAGATCTTGTGA 497 223 214 Antisense
GATCTTGTGAAGCTGCCTCCAAGCA 99 421 229 Antisense
GGAGCCGAACCTTGGCAATCTACCT 381 519 283 Antisense
GGACTTCTATTCTGTTTGCGTGTAC 171 525 333 Antisense
AACCCACCCGACGATGAATGGCGCT 545 143 364 Antisense
TTCATTCCACCATGGTGCACCGTGT 409 683 430 Antisense
ATTTTTCTACACTTGTTCTCGTCAT 472 15 530 Antisense
CTCCCATCCAGCTTTATTTATTTCG 445 233 583 Antisense
Sequence Source Affymetrix Proprietary Database