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[177752_at]

Description T26H2.2 /REP_DB=WormBase Gene ID /WP=CE16488 /TR=O18135 /GB=CAB04844.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 4.6
(-2.2)
A 		4.4
(-2.4)
A 		3.5
(-3)
A 		12.2
(3)
A 		9
B 3.3
(-1.5)
A 		6.3
(3)
A 		3.4
(-1.4)
A 		2.3
(-3)
A 		4
C 33.3
(0.2)
A 		18.8
(-1.3)
A 		3.5
(-3)
A 		59.1
(3)
A 		56
avr 13.7
(-0.1) 		9.8
(-1.2) 		3.5
(-3) 		24.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 6.4
(-0.7)
A 		4.5
(-3)
A 		4.6
(-2.9)
A 		9.4
(3)
A 		5.8
(-1.4)
A 		6.3
(-0.8)
A 		5
B 6.2
(-2.6)
A 		4.7
(-2.9)
A 		5.9
(-2.6)
A 		4.3
(-2.9)
A 		4
(-3)
A 		34.1
(3)
A 		30
C 1.7
(-3)
A 		25.9
(3)
A 		23.2
(2.3)
A 		3.1
(-2.7)
A 		6
(-1.9)
A 		4.5
(-2.3)
A 		24
avr 4.8
(-3) 		11.7
(1.1) 		11.2
(0.8) 		5.6
(-2.5) 		5.3
(-2.7) 		15
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.7
(2.3)
A 		1
(-2.3)
A 		0.9
(-3)
A 		1.8
(3)
A 		1
B 1.1
(0.6)
A 		1.5
(3)
A 		0.8
(-1.2)
A 		0.5
(-3)
A 		1
C 11
(3)
A 		5.4
(-0.4)
A 		1.2
(-3)
A 		10
(2.4)
A 		10
avr 4.6
(3) 		2.6
(-0.3) 		1
(-3) 		4.1
(2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.1)
A 		1.6
(-0.4)
A 		1
(-3)
A 		2.4
(3)
A 		1.7
(-0)
A 		1.5
(-0.9)
A 		1
B 2.1
(-2.5)
A 		1.6
(-2.7)
A 		1.4
(-2.8)
A 		1.1
(-3)
A 		1.6
(-2.7)
A 		12.7
(3)
A 		12
C 0.6
(-3)
A 		7.9
(3)
A 		5.9
(1.4)
A 		0.6
(-3)
A 		1.9
(-1.9)
A 		1.5
(-2.3)
A 		7
avr 1.3
(-3) 		3.7
(0.7) 		2.8
(-0.7) 		1.4
(-2.8) 		1.7
(-2.4) 		5.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177752_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13422
Sequence Type Exemplar sequence
Representative Public ID T26H2.2 NCBI
Target Description T26H2.2 /REP_DB=WormBase Gene ID /WP=CE16488 /TR=O18135 /GB=CAB04844.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075340 NCBI Caenorhabditis elegans T26H2.2 (T26H2.2) mRNA, complete cds. 11/11 None
SNAP00000014895 ENSEMBL cdna:SNAP chromosome:CEL140:V:19240797:19242422:-1 11/11 None
T26H2.2 ENSEMBL cdna:known chromosome:CEL140:V:19240994:19242422:-1 gene:T26H2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014904 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19240993-19242422(-) 97.75 100.0
Public Domain and Genome References
Gene Title
Ensembl T26H2.2
Entrez Gene 188947 Entrez gene
SwissProt O18135 EMBL-EBI
WormBase CE16488 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04844 Hypothetical protein T26H2.2 [Caenorhabditis elegans] ref|NP_507741.1| T26H2.2 [Caenorhabditis elegans] 0.0
blast CAB04846 Hypothetical protein T26H2.4 [Caenorhabditis elegans] ref|NP_507739.1| T26H2.4 [Caenorhabditis elegans] 1.0E-48
blast CAB04846 Hypothetical protein T26H2.4 [Caenorhabditis elegans] ref|NP_507739.1| T26H2.4 [Caenorhabditis elegans] 2.0E-48
blast CAB04466 Hypothetical protein F55C9.1 [Caenorhabditis elegans] ref|NP_507750.1| F55C9.1 [Caenorhabditis elegans] 2.0E-32
blast CAB04466 Hypothetical protein F55C9.1 [Caenorhabditis elegans] ref|NP_507750.1| F55C9.1 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507741.1 1 16-35
T26H2.2 1 16-35
SNAP00000014895 1 16-35
Sequence
Target Sequence 
>C. ELEGANS:177752_AT
tggaggggcagacggggtgtctcgaaaagcgattcgcgatttgttcaatggagtgcccat
tcttcagctgatatatgattcggacaagtttcctaataacgtgctcaaatacacatcttg
tcatgcaaaacaagctaagatcactcctggtttacaactcggaattctaccgtatgcaca
tcaagttctttgctcaaattttgaacaccttgatattaatacttcgtctcttaatttcaa
tggcttattgaacctaaacagtagtctagtcgatttatcttatagtcgtttcacggagaa
ggatttcaatttattcctgaaacattggatactaggactatcgaacccagatctgaaacg
gttgagaacatttaaaagagttgatgatctagaatctttgttacgtgggatttgtttcaa
gcaacagccggcgtccagatcaagaaccgtttcatataacctctcttgcacatggacata
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGGGGCAGACGGGGTGTCTCGA 381 549 519 Antisense
GCGATTTGTTCAATGGAGTGCCCAT 314 291 554 Antisense
GACAAGTTTCCTAATAACGTGCTCA 297 365 601 Antisense
GATCACTCCTGGTTTACAACTCGGA 601 421 657 Antisense
GGAATTCTACCGTATGCACATCAAG 432 533 679 Antisense
ACTTCGTCTCTTAATTTCAATGGCT 226 103 739 Antisense
ACTAGGACTATCGAACCCAGATCTG 249 97 849 Antisense
TTTGTTTCAAGCAACAGCCGGCGTC 144 665 929 Antisense
GCCGGCGTCCAGATCAAGAACCGTT 344 277 945 Antisense
AGAACCGTTTCATATAACCTCTCTT 166 73 961 Antisense
TAACCTCTCTTGCACATGGACATAC 499 637 975 Antisense
Sequence Source Affymetrix Proprietary Database