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[177751_at]

Description F57G8.9 /REP_DB=WormBase Gene ID /WP=CE18780 /TR=Q9XU93 /GB=CAB05530.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 10      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4.3
(-2.8)
A 		10.1
(-2)
A 		2.8
(-3)
A 		47.5
(3)
A 		45
B 2.3
(-3)
A 		4.5
(3)
A 		3.7
(0.8)
A 		2.7
(-1.9)
A 		2
C 2.2
(-3)
A 		8.8
(-1.5)
A 		5.8
(-2.2)
A 		29.2
(3)
A 		27
avr 2.9
(-3) 		7.8
(-1.8) 		4.1
(-2.7) 		26.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.9
(3)
A 		3.2
(-3)
A 		4.8
(-1.8)
A 		3.6
(-2.7)
A 		3.4
(-2.8)
A 		5.2
(-1.4)
A 		8
B 1.8
(-2.9)
A 		3.8
(-2.1)
A 		16.4
(3)
A 		4.7
(-1.7)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		15
C 3.9
(-1.7)
A 		2.9
(-2.3)
A 		2.6
(-2.4)
A 		12.3
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		11
avr 5.5
(0.4) 		3.3
(-1.9) 		7.9
(3) 		6.9
(1.9) 		2.3
(-3) 		2.8
(-2.5) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.6
(-2.1)
A 		2.2
(-1.6)
A 		0.7
(-3)
A 		7
(3)
A 		6
B 0.7
(-1.8)
A 		1.1
(3)
A 		0.9
(0.6)
A 		0.6
(-3)
A 		1
C 0.7
(-3)
A 		2.5
(-0.4)
A 		2
(-1.1)
A 		4.9
(3)
A 		4
avr 1
(-3) 		1.9
(-1.3) 		1.2
(-2.6) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2
(3)
A 		1.1
(-1.9)
A 		1.1
(-1.9)
A 		0.9
(-3)
A 		1
(-2.5)
A 		1.3
(-0.8)
A 		1
B 0.6
(-3)
A 		1.3
(-1.8)
A 		4
(3)
A 		1.2
(-1.9)
A 		0.7
(-2.8)
A 		0.6
(-3)
A 		3
C 1.4
(-0.3)
A 		0.9
(-1.8)
A 		0.7
(-2.4)
A 		2.5
(3)
A 		0.6
(-2.7)
A 		0.5
(-3)
A 		2
avr 1.3
(-0.3) 		1.1
(-1.4) 		1.9
(3) 		1.5
(0.8) 		0.8
(-3) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14652
Sequence Type Exemplar sequence
Representative Public ID F57G8.9 NCBI
Target Description F57G8.9 /REP_DB=WormBase Gene ID /WP=CE18780 /TR=Q9XU93 /GB=CAB05530.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074725(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074725 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-36) (srv-36) mRNA, complete cds. 10/11 None
GENEFINDER00000042083 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16321674:16330060:-1 10/11 None
F57G8.8 ENSEMBL cdna:known chromosome:CEL140:V:16323380:16330060:-1 gene:F57G8.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16326257-16326591(-) 95.24 95.24
Public Domain and Genome References
Gene Title
Gene Symbol srv-36
Ensembl F57G8.8
Entrez Gene 186469 Entrez gene
SwissProt Q9XU94 EMBL-EBI
WormBase CE35184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05529 Hypothetical protein F57G8.8 [Caenorhabditis elegans] ref|NP_507126.2| Serpentine Receptor, class V family member (srv-36) [Caenorhabditis elegans] 0.0
blast CAB05529 Hypothetical protein F57G8.8 [Caenorhabditis elegans] ref|NP_507126.2| Serpentine Receptor, class V family member (srv-36) [Caenorhabditis elegans] 1.0E-114
blast CAE56564 Hypothetical protein CBG24302 [Caenorhabditis briggsae] 6.0E-87
blast CAE56564 Hypothetical protein CBG24302 [Caenorhabditis briggsae] 8.0E-80
blast T22878 hypothetical protein F57G8.2 - Caenorhabditis elegans 1.0E-78
blast T22878 hypothetical protein F57G8.2 - Caenorhabditis elegans 2.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507126.2 7 10-31,43-65,75-97,102-124,158-180,210-232,263-285
F57G8.8 7 10-31,43-65,75-97,102-124,158-180,210-232,263-285
GENEFINDER00000042083 5 10-32,45-67,102-124,154-176,207-229
Sequence
Target Sequence 
>C. ELEGANS:177751_AT
gcctatatgtgatcctctctgtcaccccagcttacactcttatcctttgtcactggctca
tttccatagctcttcacatgccagctgtattgatctgtcacgcgcactttgaaaatgcgc
agtcgtttttcgtcataacatcagaagaacacaagaagacaagtgctaccatcgtcattt
gcacatttacattatgtggactttcggtcgccggcatgtattgttgcattattcggaaat
tgtgctcggtcaagcgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTATATGTGATCCTCTCTGTCAC 687 281 17 Antisense
TTGTCACTGGCTCATTTCCATAGCT 129 709 63 Antisense
GCCAGCTGTATTGATCTGTCACGCG 408 279 96 Antisense
GATCTGTCACGCGCACTTTGAAAAT 284 419 108 Antisense
AAATGCGCAGTCGTTTTTCGTCATA 480 119 129 Antisense
GTCGTTTTTCGTCATAACATCAGAA 310 471 138 Antisense
GACAAGTGCTACCATCGTCATTTGC 399 365 174 Antisense
ATCGTCATTTGCACATTTACATTAT 373 35 187 Antisense
ACATTATGTGGACTTTCGGTCGCCG 154 105 205 Antisense
CGCCGGCATGTATTGTTGCATTATT 360 255 225 Antisense
GAAATTGTGCTCGGTCAAGCGAACA 678 363 252 Antisense
Sequence Source Affymetrix Proprietary Database