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[177749_at]

Description C05E7.4 /REP_DB=WormBase Gene ID /WP=CE02978 /TR=Q17672 /GB=CAA91789.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 18      4grp_total > 13      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 103.3
(1.2)
P 		64.9
(-2.4)
P 		58.2
(-3)
P 		123.1
(3)
P 		65
B 92.3
(-0.4)
P 		65.6
(-2.7)
P 		61.5
(-3)
P 		132
(3)
P 		71
C 113.8
(1)
P 		69.3
(-1.7)
P 		48.8
(-3)
P 		145.9
(3)
P 		97
avr 103.1
(0.6) 		66.6
(-2.2) 		56.2
(-3) 		133.7
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 109.9
(3)
P 		47.3
(-3)
P 		75.3
(-0.3)
P 		64.3
(-1.3)
P 		70.6
(-0.7)
P 		46.8
(-3)
P 		63
B 84
(2.3)
P 		69.3
(-0.1)
P 		51.4
(-3)
P 		88.5
(3)
P 		73.8
(0.6)
P 		71.2
(0.2)
P 		37
C 84.4
(2.1)
P 		90
(3)
P 		62.6
(-1.3)
P 		51.7
(-3)
P 		69
(-0.3)
P 		76
(0.8)
P 		38
avr 92.8
(3) 		68.9
(-1.8) 		63.1
(-3) 		68.2
(-2) 		71.1
(-1.4) 		64.7
(-2.7) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 37.6
(3)
P 		14.1
(-3)
P 		15.2
(-2.7)
P 		18
(-2)
P 		24
B 29.4
(3)
P 		16.2
(-2.2)
P 		14.2
(-3)
P 		28.1
(2.5)
P 		15
C 37.7
(3)
P 		19.9
(-2.2)
P 		17
(-3)
P 		24.6
(-0.8)
P 		21
avr 34.9
(3) 		16.7
(-2.6) 		15.5
(-3) 		23.6
(-0.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 20.3
(2.4)
P 		16.8
(0.3)
P 		16.4
(0)
P 		16.3
(-0)
P 		21.3
(3)
P 		11.4
(-3)
P 		10
B 29.2
(2.7)
P 		23.1
(0.6)
P 		12.5
(-3)
P 		23.4
(0.7)
P 		30
(3)
P 		26.6
(1.8)
P 		18
C 31.3
(3)
P 		27.5
(1.9)
P 		15.9
(-1.4)
P 		10.4
(-3)
P 		22.3
(0.4)
P 		25.4
(1.3)
P 		21
avr 26.9
(3) 		22.5
(0.8) 		14.9
(-3) 		16.7
(-2.1) 		24.5
(1.8) 		21.1
(0.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17447
Sequence Type Exemplar sequence
Representative Public ID C05E7.4 NCBI
Target Description C05E7.4 /REP_DB=WormBase Gene ID /WP=CE02978 /TR=Q17672 /GB=CAA91789.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077753 NCBI Caenorhabditis elegans C05E7.4 (C05E7.4) mRNA, complete cds. 11/11 None
GENEFINDER00000014419 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12965404:12968650:1 11/11 None
C05E7.4 ENSEMBL cdna:known chromosome:CEL140:X:12965404:12968375:1 gene:C05E7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014414 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12965403-12968375(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E7.4
Entrez Gene 182268 Entrez gene
SwissProt Q17672 EMBL-EBI
WormBase CE34155 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70364 Hypothetical protein CBG16922 [Caenorhabditis briggsae] 1.0E-160
blast CAA91789 Hypothetical protein C05E7.4 [Caenorhabditis elegans] ref|NP_510154.2| C05E7.4 [Caenorhabditis elegans] 1.0E-130
blast CAA91789 Hypothetical protein C05E7.4 [Caenorhabditis elegans] ref|NP_510154.2| C05E7.4 [Caenorhabditis elegans] 1.0E-129
blast CAE70364 Hypothetical protein CBG16922 [Caenorhabditis briggsae] 1.0E-120
blast CAE65619 Hypothetical protein CBG10659 [Caenorhabditis briggsae] 5.0E-19
blast CAE65619 Hypothetical protein CBG10659 [Caenorhabditis briggsae] 1.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510154.2 6 30-52,59-81,96-118,147-169,203-225,251-273
C05E7.4 6 30-52,59-81,96-118,147-169,203-225,251-273
GENEFINDER00000014419 7 30-52,59-81,96-118,147-169,203-225,251-273,288-310
Sequence
Target Sequence 
>C. ELEGANS:177749_AT
gtatggcagggatcttcgtcatttgctccgactctctccgagcacactcatttgtcattg
accaagtcttcgtgttcttgttgcccaaaatcatcccgttgggcctcttttttcagatgc
tcagtgtatatatcacagttttggctgcatttgactgtttctattctgtatattgtggaa
caaaatgcgagccaaaacgcagcacatgggctccacgggttctcgcgcttgtcgtcattt
cggtggccggctataatattgttcaatttggagatttgcaggctattgaatgtcttcacc
cggacaattacacactttttgagttatgccctactgaaatgagggtcagtgaaacatatg
tcattgtgtataaaggatatctttatgcactttcaatggcatttctcccatttgtacttc
tcacgtttttaactgtttcgatcattgtaatgcttcgtcggaaaaacgaaacaatgcaca
tggacaaggcagagaaagaagaatgcgaagatgacgggggcaataatccggttgtacttc
ttctagtggttctcctatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGGCAGGGATCTTCGTCATTTG 480 453 263 Antisense
TCTCCGAGCACACTCATTTGTCATT 57 611 297 Antisense
GTCATTGACCAAGTCTTCGTGTTCT 677 467 316 Antisense
GTGTTCTTGTTGCCCAAAATCATCC 658 483 334 Antisense
GTTTTGGCTGCATTTGACTGTTTCT 605 447 400 Antisense
TCGTCATTTCGGTGGCCGGCTATAA 130 603 494 Antisense
GCAGGCTATTGAATGTCTTCACCCG 304 311 540 Antisense
TCACCCGGACAATTACACACTTTTT 102 625 558 Antisense
TTGTACTTCTCACGTTTTTAACTGT 79 705 674 Antisense
ATAATCCGGTTGTACTTCTTCTAGT 518 25 785 Antisense
TTCTTCTAGTGGTTCTCCTATTTCT 314 689 800 Antisense
Sequence Source Affymetrix Proprietary Database