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[177748_s_at]

Description F54F7.3 /REP_DB=WormBase Gene ID /WP=CE03418 /TR=Q20790 /GB=CAA91756.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 14.2
(-1.7)
A 		2.8
(-3)
A 		4.4
(-2.8)
A 		54.3
(3)
A 		52
B 3.5
(-2.9)
A 		3.2
(-3)
A 		16.1
(3)
A 		8.2
(-0.7)
A 		13
C 2.3
(-3)
A 		13.7
(3)
A 		4.5
(-1.8)
A 		7.6
(-0.2)
A 		11
avr 6.7
(-3) 		6.6
(-3) 		8.3
(-2.4) 		23.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 889
1 2 3 4 5 6 range
A 26.9
(-2.8)
A 		2.5
(-3)
A 		1.2
(-3)
A 		22.3
(-2.8)
A 		818.5
(3)
P 		597.3
(1.4)
P 		817
B 12.6
(-2.9)
A 		24
(-2.9)
A 		3.1
(-3)
A 		50.7
(-2.7)
A 		889.9
(3)
P 		714.5
(1.8)
P 		887
C 4.7
(-3)
A 		5.9
(-3)
A 		7.4
(-3)
A 		44.2
(-2.7)
A 		868.4
(3)
P 		785.1
(2.4)
P 		864
avr 14.7
(-2.9) 		10.8
(-3) 		3.9
(-3) 		39.1
(-2.8) 		858.9
(3) 		699
(1.9) 		855
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.2
(0.8)
A 		0.6
(-3)
A 		1.1
(-2.6)
A 		7.9
(3)
A 		7
B 1.1
(-2.4)
A 		0.8
(-3)
A 		3.7
(3)
A 		1.8
(-0.9)
A 		3
C 0.8
(-3)
A 		3.9
(3)
A 		1.6
(-1.5)
A 		1.3
(-2)
A 		3
avr 2.4
(-1.1) 		1.8
(-3) 		2.1
(-2.1) 		3.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 5
(-2.9)
A 		0.9
(-3)
A 		0.3
(-3)
A 		5.6
(-2.9)
A 		247
(3)
P 		145.4
(0.5)
P 		247
B 4.4
(-2.9)
A 		8
(-2.9)
A 		0.7
(-3)
A 		13.4
(-2.8)
A 		361.5
(3)
P 		266.4
(1.4)
P 		361
C 1.8
(-3)
A 		1.8
(-3)
A 		1.9
(-3)
A 		8.9
(-2.8)
A 		281
(3)
P 		262.8
(2.6)
P 		279
avr 3.7
(-2.9) 		3.6
(-2.9) 		1
(-3) 		9.3
(-2.8) 		296.5
(3) 		224.9
(1.5) 		296
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177748_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15969
Sequence Type Exemplar sequence
Representative Public ID F54F7.3 NCBI
Target Description F54F7.3 /REP_DB=WormBase Gene ID /WP=CE03418 /TR=Q20790 /GB=CAA91756.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077577 NCBI Caenorhabditis elegans F54F7.3 (F54F7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000009565 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11846359:11850045:-1 10/11 None
F54F7.3 ENSEMBL cdna:known chromosome:CEL140:X:11849381:11850064:-1 gene:F54F7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11849380-11850045(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54F7.3
Entrez Gene 181361 Entrez gene
SwissProt Q20790 EMBL-EBI
WormBase CE03418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91756 Hypothetical protein F54F7.3 [Caenorhabditis elegans] ref|NP_509978.1| F54F7.3 [Caenorhabditis elegans] 1.0E-104
blast CAA91756 Hypothetical protein F54F7.3 [Caenorhabditis elegans] ref|NP_509978.1| F54F7.3 [Caenorhabditis elegans] 2.0E-97
blast CAB03134 Hypothetical protein F53H4.2 [Caenorhabditis elegans] ref|NP_510608.1| F53H4.2 [Caenorhabditis elegans] 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:177748_S_AT
gtattattctgtctaactgttttctttattcgaaattctctttcggcagaaagtagttca
gagaaaaaaatcccaccagcaaacagtgttgattccaacaaatcattatgtatcactcat
ctaaaaatatttgaaacttgcatagacggacttcataacgcgtacaaaaagatcaatgaa
gaagacttgatttctggtaacattaataaaacgataacgttgaaacttgaattgtatcac
agttcatgtttcaagtatgctctttgcctaaattcggctgtgaatcaaacaattcaaaac
tttgtgacagtaatggatgataacattgatcaaatttcggacgactgcattcatcctaaa
aacaacgctatagaaaattgcagtacagaggaccaattattcaaagaattcgctgcaaag
gcaggttacagagccatttctgttctcaacgattatgtcaaagaagtacaacaaaaaacg
aaaggtgcttcaagattcagtctttttctttctatctgtgtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTATTCTGTCTAACTGTTTTCT 284 453 28 Antisense
AATCCCACCAGCAAACAGTGTTGAT 236 169 96 Antisense
AAATCATTATGTATCACTCATCTAA 453 117 127 Antisense
GAATTGTATCACAGTTCATGTTTCA 688 323 256 Antisense
CATGTTTCAAGTATGCTCTTTGCCT 167 211 272 Antisense
GCTCTTTGCCTAAATTCGGCTGTGA 426 299 286 Antisense
AAATTTCGGACGACTGCATTCATCC 88 117 359 Antisense
AAAGGCAGGTTACAGAGCCATTTCT 563 119 444 Antisense
GAGCCATTTCTGTTCTCAACGATTA 496 385 458 Antisense
GGTGCTTCAAGATTCAGTCTTTTTC 493 501 511 Antisense
GTCTTTTTCTTTCTATCTGTGTAAC 485 469 527 Antisense
Sequence Source Affymetrix Proprietary Database