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[177747_at]

Description F58G6.2 /REP_DB=WormBase Gene ID /WP=CE03429 /TR=Q21008 /GB=CAA92469.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 52      6grp_total > 50      4grp_total > 58      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1046
1 2 3 4 range
A 411
(-1.5)
P 		1188.6
(3)
P 		996.7
(1.9)
P 		153.3
(-3)
P 		1035
B 394.8
(-1.3)
P 		1030.5
(3)
P 		932.6
(2.3)
P 		143.1
(-3)
P 		887
C 357.8
(-1.6)
P 		1069.7
(3)
P 		1008.2
(2.6)
P 		147.7
(-3)
P 		922
avr 387.9
(-1.5) 		1096.3
(3) 		979.2
(2.3) 		148
(-3) 		948

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 723
1 2 3 4 5 6 range
A 673.3
(0.1)
P 		561.9
(-1)
P 		966.7
(3)
P 		835.2
(1.7)
P 		395.8
(-2.6)
P 		353.1
(-3)
P 		614
B 653.2
(-0.7)
P 		585.3
(-1.3)
P 		1076.1
(3)
P 		828.4
(0.8)
P 		429.7
(-2.7)
P 		399.1
(-3)
P 		677
C 612.2
(-0.3)
P 		639.3
(-0)
P 		867.2
(2.5)
P 		914
(3)
P 		370.5
(-3)
P 		495.8
(-1.6)
P 		544
avr 646.2
(-0.4) 		595.5
(-0.9) 		970
(3) 		859.2
(1.8) 		398.7
(-3) 		416
(-2.8) 		571
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 149.6
(0.2)
P 		258
(2.9)
P 		260.6
(3)
P 		22.4
(-3)
P 		238
B 125.9
(-0.4)
P 		254.5
(3)
P 		216.1
(2)
P 		30.5
(-3)
P 		224
C 118.5
(-1.3)
P 		307.5
(2.2)
P 		351.4
(3)
P 		24.9
(-3)
P 		327
avr 131.3
(-0.5) 		273.3
(2.9) 		276
(3) 		25.9
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 124.1
(-1.2)
P 		199.8
(2.4)
P 		210.5
(2.9)
P 		211.8
(3)
P 		119.4
(-1.4)
P 		86
(-3)
P 		126
B 227.3
(1.2)
P 		194.8
(-0.5)
P 		261.3
(3)
P 		219.4
(0.8)
P 		174.6
(-1.6)
P 		148.8
(-3)
P 		113
C 226.9
(3)
P 		195.1
(1.2)
P 		220.7
(2.7)
P 		183.8
(0.6)
P 		119.9
(-3)
P 		166
(-0.4)
P 		107
avr 192.8
(0.7) 		196.6
(0.9) 		230.8
(3) 		205
(1.4) 		138
(-2.7) 		133.6
(-3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9518
Sequence Type Exemplar sequence
Representative Public ID F58G6.2 NCBI
Target Description F58G6.2 /REP_DB=WormBase Gene ID /WP=CE03429 /TR=Q21008 /GB=CAA92469.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069311, NM_001028076
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F58G6.2 ENSEMBL cdna:known chromosome:CEL140:IV:9649194:9650467:1 gene:F58G6.2 None
SNAP00000020766 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9650060:9650467:1 None
NM_001028076 NCBI Caenorhabditis elegans F58G6.9 (F58G6.9) mRNA, complete cds. None
SNAP00000020767 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9651661:9652351:1 None
F58G6.9 ENSEMBL cdna:known chromosome:CEL140:IV:9651661:9652351:1 gene:F58G6.9 None
NM_069311 NCBI Caenorhabditis elegans Serpentine Receptor, class M family member (srm-3) (srm-3) mRNA, complete cds. None
GENEFINDER00000020771 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9649194:9655272:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9649613-9652357(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol srm-3
Ensembl F58G6.2
F58G6.9
Entrez Gene 186545 Entrez gene
3565521 Entrez gene
SwissProt Q21008 EMBL-EBI
Q5CZ44 EMBL-EBI
WormBase CE38079 Wormbase
CE38080 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6825 copper ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5375 copper ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92469 Hypothetical protein F58G6.2 [Caenorhabditis elegans] ref|NP_501712.2| Serpentine Receptor, class M family member (srm-3) [Caenorhabditis elegans] 1.0E-155
blast CAA92469 Hypothetical protein F58G6.2 [Caenorhabditis elegans] ref|NP_501712.2| Serpentine Receptor, class M family member (srm-3) [Caenorhabditis elegans] 1.0E-150
blast CAE72802 Hypothetical protein CBG20079 [Caenorhabditis briggsae] 7.0E-85
blast CAI59117 Hypothetical protein F58G6.9 [Caenorhabditis elegans] ref|NP_001023247.1| F58G6.9 [Caenorhabditis elegans] 3.0E-82
blast CAI59117 Hypothetical protein F58G6.9 [Caenorhabditis elegans] ref|NP_001023247.1| F58G6.9 [Caenorhabditis elegans] 9.0E-71
blast CAE72798 Hypothetical protein CBG20073 [Caenorhabditis briggsae] 1.0E-70
blast AAK18970 Hypothetical protein K12C11.3 [Caenorhabditis elegans] ref|NP_490841.2| K12C11.3 [Caenorhabditis elegans] 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.9E-53
Pfam IPR007274 EMBL-EBI Ctr copper transporter 8.4E-47
Pfam IPR007274 EMBL-EBI Ctr copper transporter 6.2E-42
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.1E-53
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023247.1 2 38-60,125-147
NP_501712.2 4 98-120,164-186,210-232,247-266
F58G6.2 4 98-120,164-186,210-232,247-266
F58G6.9 2 38-60,125-147
SNAP00000020766 2 7-29,33-55
SNAP00000020767 2 38-60,111-133
GENEFINDER00000020771 11 61-83,98-120,166-188,213-235,247-266,342-364,414-436,472-494,514-536,546-568,656-678
Sequence
Target Sequence 
>C. ELEGANS:177747_AT
tggtgtccagctatcaatcctattttagtaattctaatgatcaagaacgtccaagatcaa
cttattccaaaaaagttttccaaaacatcaacaatgtcaaaactaagccaagcccaaaca
cttcaaaatataaatatttctaacattagattgagaatgaacatgatgaacatgagcatg
acaacaatgtctggacccgttgccaaacgtcataggatgtggatgtggtaccacgtagat
gtcgaggatactgtacttttcaaaagttggacggtttttgatgccggaacaatggtatgg
acatgcttcgttgtcgctgctgctggaattttgctagaagctctgaaatatgcaagatgg
gcaactgaagaacgcatgaagatagatcaggagaatgtagactcaaaaaccaagtacgga
ggaattaaaataccggggaagagtgagaaatataatttttggaagcgacacattatcgat
tctttgtatcacttctggcaacttctacttgcatatattttgatgaacgtctatatggtt
ttctcggtctacatttgcttgtcattatgctttggcctagctattgggcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGTCCAGCTATCAATCCTATTT 42 553 466 Antisense
GAACGTCCAAGATCAACTTATTCCA 452 347 510 Antisense
CTAAGCCAAGCCCAAACACTTCAAA 234 227 568 Antisense
GACAACAATGTCTGGACCCGTTGCC 637 363 645 Antisense
GGACCCGTTGCCAAACGTCATAGGA 347 521 658 Antisense
GCTGCTGCTGGAATTTTGCTAGAAG 285 297 781 Antisense
AAGCGACACATTATCGATTCTTTGT 245 149 928 Antisense
TGTATCACTTCTGGCAACTTCTACT 234 561 950 Antisense
CGTCTATATGGTTTTCTCGGTCTAC 227 247 993 Antisense
TCTCGGTCTACATTTGCTTGTCATT 260 611 1007 Antisense
GCTTTGGCCTAGCTATTGGGCACTT 468 295 1034 Antisense
Sequence Source Affymetrix Proprietary Database