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[177744_at]

Description C11H1.2 /REP_DB=WormBase Gene ID /WP=CE05261 /TR=Q17912 /GB=CAA94117.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 11      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 90      6grp_total > 23      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 176
(3)
P 		118.7
(-3)
P 		139.2
(-0.9)
P 		145.1
(-0.2)
P 		57
B 132.5
(-3)
P 		148.9
(3)
P 		147.4
(2.5)
P 		148.8
(3)
P 		16
C 180.7
(1.9)
P 		200.2
(3)
P 		147.5
(0.1)
P 		91.1
(-3)
P 		109
avr 163.1
(3) 		155.9
(1.8) 		144.7
(-0.2) 		128.3
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 163.3
(3)
P 		145.1
(0.8)
P 		157
(2.3)
P 		133.6
(-0.5)
P 		114.5
(-2.8)
P 		112.7
(-3)
P 		51
B 184.6
(2.3)
P 		162.6
(0.6)
P 		160.2
(0.4)
P 		193.8
(3)
P 		117.1
(-3)
P 		130.8
(-1.9)
P 		77
C 174.6
(3)
P 		166.4
(2.2)
P 		143.3
(-0.1)
P 		147.9
(0.4)
P 		113.9
(-3)
P 		124.6
(-1.9)
P 		61
avr 174.2
(3) 		158
(1.4) 		153.5
(0.9) 		158.4
(1.4) 		115.2
(-3) 		122.7
(-2.2) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 64.1
(3)
P 		25.8
(-2.4)
P 		36.4
(-0.9)
P 		21.2
(-3)
P 		43
B 42.3
(3)
P 		36.8
(-0.1)
P 		34.2
(-1.6)
P 		31.7
(-3)
P 		11
C 59.8
(3)
P 		57.6
(2.7)
P 		51.4
(1.9)
P 		15.4
(-3)
P 		44
avr 55.4
(3) 		40.1
(0.2) 		40.7
(0.3) 		22.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 30.1
(-2.3)
P 		51.6
(3)
P 		34.2
(-1.3)
P 		33.9
(-1.4)
P 		34.6
(-1.2)
P 		27.4
(-3)
P 		24
B 64.2
(3)
P 		54.1
(0.6)
P 		38.9
(-3)
P 		51.3
(-0.1)
P 		47.6
(-0.9)
P 		48.8
(-0.7)
P 		25
C 64.7
(3)
P 		50.8
(0.6)
P 		36.5
(-1.8)
P 		29.7
(-3)
P 		36.8
(-1.8)
P 		41.7
(-0.9)
P 		35
avr 53
(3) 		52.2
(2.7) 		36.5
(-3) 		38.3
(-2.3) 		39.7
(-1.8) 		39.3
(-2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17363
Sequence Type Exemplar sequence
Representative Public ID C11H1.2 NCBI
Target Description C11H1.2 /REP_DB=WormBase Gene ID /WP=CE05261 /TR=Q17912 /GB=CAA94117.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077983(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077983 NCBI Caenorhabditis elegans C11H1.2 (C11H1.2) mRNA, complete cds. 10/11 None
GENEFINDER00000018166 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14305057:14307646:-1 10/11 None
C11H1.2 ENSEMBL cdna:known chromosome:CEL140:X:14304865:14307686:-1 gene:C11H1.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018160 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14305141-14307646(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11H1.2
Entrez Gene 182524 Entrez gene
SwissProt Q17912 EMBL-EBI
WormBase CE31413 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262869_S_AT expressed protein at
ATGENOME1:12077_AT expressed protein at
Protein Similarities
Method ID Description E-Value
blast CAA94117 Hypothetical protein C11H1.2 [Caenorhabditis elegans] ref|NP_510384.2| C11H1.2 [Caenorhabditis elegans] 0.0
blast CAE63009 Hypothetical protein CBG07249 [Caenorhabditis briggsae] 0.0
blast CAA22103 Hypothetical protein Y75B8A.16 [Caenorhabditis elegans] ref|NP_499588.1| Y75B8A.16 [Caenorhabditis elegans] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510384.2 9 4-26,38-60,75-97,109-126,146-168,287-309,344-366,386-408,428-450
C11H1.2 9 4-26,38-60,75-97,109-126,146-168,287-309,344-366,386-408,428-450
GENEFINDER00000018166 9 4-26,38-60,75-97,109-126,146-168,287-309,344-366,386-408,428-450
Sequence
Target Sequence 
>C. ELEGANS:177744_AT
caacgtgcttggtcattttttctcactttattgcgtttggaaaatttttatatctctcgt
taacatactatttgatagagtcggaaaggtggaccctgtgacgcggttgatagaagttag
tgtaaactacgttggcattgatatggacgtccgctactggtcacagtacatctccttctt
tctggtaggagtcattgctattacatcagtcagaggtgagaagtcttcttatcacaatgg
caaaattcttcgtgtcaatttcgaatgtccgttcatccaatataatcgttctcggatttg
cgcaaatcatgggcatgtactttgtttcaagtgtgctgctgatgcgaatgaacgtgccgc
cagagtatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGTGCTTGGTCATTTTTTCTCA 520 187 888 Antisense
TTTTTCTCACTTTATTGCGTTTGGA 442 675 904 Antisense
TGGACCCTGTGACGCGGTTGATAGA 482 547 977 Antisense
TGATATGGACGTCCGCTACTGGTCA 81 561 1026 Antisense
GTACATCTCCTTCTTTCTGGTAGGA 238 461 1053 Antisense
GAGTCATTGCTATTACATCAGTCAG 160 401 1076 Antisense
AGAAGTCTTCTTATCACAATGGCAA 233 75 1106 Antisense
GTCAATTTCGAATGTCCGTTCATCC 434 463 1141 Antisense
GTCCGTTCATCCAATATAATCGTTC 177 477 1154 Antisense
AATCGTTCTCGGATTTGCGCAAATC 464 169 1171 Antisense
GAATGAACGTGCCGCCAGAGTATCG 353 331 1233 Antisense
Sequence Source Affymetrix Proprietary Database