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[177743_at]

Description E03A3.7 /REP_DB=WormBase Gene ID /WP=CE20646 /TR=Q9XVX6 /GB=CAA86234.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 34      6grp_total > 02      4grp_total > 46      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 313.1
(3)
P 		182.5
(-0.9)
P 		112.2
(-3)
A 		143.3
(-2.1)
P 		201
B 291.2
(3)
P 		207.8
(0.5)
P 		93.9
(-3)
A 		141.3
(-1.6)
A 		197
C 323.9
(3)
P 		224.1
(-0.5)
P 		150.7
(-3)
P 		155
(-2.9)
P 		173
avr 309.4
(3) 		204.8
(-0.3) 		118.9
(-3) 		146.5
(-2.1) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 134.1
(-1.4)
M 		292.5
(3)
P 		78.7
(-3)
A 		144.2
(-1.2)
P 		131.3
(-1.5)
A 		109.3
(-2.1)
A 		214
B 150.2
(1)
P 		196.1
(3)
P 		93.1
(-1.5)
M 		94
(-1.4)
A 		57.9
(-3)
A 		98.4
(-1.2)
A 		138
C 220.6
(3)
P 		201.4
(2.1)
P 		165.6
(0.4)
P 		119.4
(-1.7)
A 		114.5
(-2)
A 		92.5
(-3)
M 		128
avr 168.3
(0.2) 		230
(3) 		112.5
(-2.4) 		119.2
(-2.1) 		101.2
(-2.9) 		100.1
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 114
(3)
P 		39.6
(-1.8)
P 		29.3
(-2.5)
A 		21
(-3)
P 		93
B 92.9
(3)
P 		51.3
(-0.5)
P 		21.8
(-3)
A 		30.1
(-2.3)
A 		71
C 107.2
(3)
P 		64.4
(-0.2)
P 		52.5
(-1)
P 		26.1
(-3)
P 		81
avr 104.7
(3) 		51.8
(-1) 		34.5
(-2.3) 		25.7
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 24.7
(-2.5)
M 		104
(3)
P 		17.1
(-3)
A 		36.6
(-1.7)
P 		39.6
(-1.4)
A 		26.6
(-2.3)
A 		87
B 52.3
(1.2)
P 		65.3
(3)
P 		22.6
(-3)
M 		24.9
(-2.7)
A 		23.5
(-2.9)
A 		36.7
(-1)
A 		43
C 81.8
(3)
P 		61.4
(0.9)
P 		42.2
(-1.1)
P 		24
(-3)
A 		37.1
(-1.6)
A 		31
(-2.3)
M 		58
avr 52.9
(0.1) 		76.9
(3) 		27.3
(-3) 		28.5
(-2.9) 		33.4
(-2.3) 		31.4
(-2.5) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6176
Sequence Type Exemplar sequence
Representative Public ID E03A3.7 NCBI
Target Description E03A3.7 /REP_DB=WormBase Gene ID /WP=CE20646 /TR=Q9XVX6 /GB=CAA86234.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065414 NCBI Caenorhabditis elegans E03A3.7 (E03A3.7) mRNA, complete cds. 11/11 None
GENEFINDER00000016646 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4069182:4076104:1 11/11 None
E03A3.7 ENSEMBL cdna:known chromosome:CEL140:III:4074337:4075110:1 gene:E03A3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4074336-4075110(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03A3.7
Entrez Gene 3565358 Entrez gene
SwissProt Q9XVX6 EMBL-EBI
WormBase CE20646 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86231 Hypothetical protein E03A3.6 [Caenorhabditis elegans] ref|NP_497814.2| UNCoordinated family member (unc-79) [Caenorhabditis elegans] 0.0
blast CAE72889 Hypothetical protein CBG20202 [Caenorhabditis briggsae] 0.0
blast CAA86234 Hypothetical protein E03A3.7 [Caenorhabditis elegans] ref|NP_497815.1| E03A3.7 [Caenorhabditis elegans] 1.0E-130
blast CAA86234 Hypothetical protein E03A3.7 [Caenorhabditis elegans] ref|NP_497815.1| E03A3.7 [Caenorhabditis elegans] 1.0E-126
blast CAE72890 Hypothetical protein CBG20203 [Caenorhabditis briggsae] 1.0E-123
blast EAL29171 GA18756-PA [Drosophila pseudoobscura] 4.0E-38
Sequence
Target Sequence 
>C. ELEGANS:177743_AT
gggaacgactccgatcagattacattcaagttggggagctagccactcatctattactcc
atgcaatgaccctgccatgcggagaggaaatgttttggaaaatggttcacagagatttca
cgtcaccgcaatggaatgtgagatttgatgcagttggaaaggcttatgtgatggctcaaa
tgatcaagacagctcctgtcaaagcaaataaagtggttcaaacttgcttggcagcagttt
tctatcactttattgcttcgttacacgatccgaatccatccgtggctcagagagcaatta
ttgctttaagagctatgcctagacatactttgaagctaatgtgtatgtgcttcgaatcac
aatttgatcattgcattgtggaccgtccgttgatcattcatgcgatcacaatgatgtcaa
ttttgctccccgaccagactactttgactttcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAACGACTCCGATCAGATTACAT 174 495 188 Antisense
GAGCTAGCCACTCATCTATTACTCC 449 387 223 Antisense
CTATTACTCCATGCAATGACCCTGC 256 223 238 Antisense
TTCACAGAGATTTCACGTCACCGCA 45 687 293 Antisense
GCTTGGCAGCAGTTTTCTATCACTT 561 307 413 Antisense
ATCACTTTATTGCTTCGTTACACGA 30 27 431 Antisense
ACACGATCCGAATCCATCCGTGGCT 706 107 450 Antisense
TGATCATTGCATTGTGGACCGTCCG 291 565 552 Antisense
ACCGTCCGTTGATCATTCATGCGAT 430 87 569 Antisense
AATGATGTCAATTTTGCTCCCCGAC 258 165 597 Antisense
GACCAGACTACTTTGACTTTCGACT 687 383 619 Antisense
Sequence Source Affymetrix Proprietary Database