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[177742_at]

Description F37D6.3 /REP_DB=WormBase Gene ID /WP=CE05820 /TR=Q20131 /GB=CAA99849.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 12      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 84.8
(-2.1)
A 		61.5
(-2.6)
A 		46.6
(-3)
A 		300.8
(3)
P 		254
B 158.4
(1.1)
P 		86
(-2.2)
A 		68.4
(-3)
A 		201
(3)
P 		133
C 129.9
(-0.5)
A 		98.1
(-1.7)
A 		61.1
(-3)
A 		228.5
(3)
P 		167
avr 124.4
(-0.9) 		81.9
(-2.2) 		58.7
(-3) 		243.4
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 170.3
(3)
P 		145.4
(1.6)
P 		144.5
(1.6)
P 		104.2
(-0.6)
A 		78
(-2.1)
A 		61.5
(-3)
A 		109
B 118.5
(1.3)
P 		142.6
(3)
P 		91.8
(-0.5)
A 		93.4
(-0.4)
A 		90.8
(-0.6)
P 		55.7
(-3)
P 		87
C 196.6
(3)
P 		144.2
(0.6)
P 		121.8
(-0.4)
A 		87.2
(-2)
M 		66.5
(-3)
M 		69.1
(-2.9)
A 		130
avr 161.8
(3) 		144.1
(1.9) 		119.4
(0.4) 		94.9
(-1) 		78.4
(-2) 		62.1
(-3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 30.9
(0.5)
A 		13.3
(-2.8)
A 		12.2
(-3)
A 		44
(3)
P 		32
B 50.5
(3)
P 		21.2
(-2.1)
A 		15.8
(-3)
A 		42.8
(1.7)
P 		35
C 43
(3)
A 		28.2
(-1.1)
A 		21.3
(-3)
A 		38.5
(1.8)
P 		22
avr 41.5
(2.9) 		20.9
(-1.9) 		16.4
(-3) 		41.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 31.4
(-0.3)
P 		51.7
(3)
P 		31.5
(-0.3)
P 		26.4
(-1.1)
A 		23.5
(-1.6)
A 		15
(-3)
A 		37
B 41.2
(1.6)
P 		47.5
(3)
P 		22.3
(-2.7)
A 		24.7
(-2.1)
A 		36.9
(0.6)
P 		20.8
(-3)
P 		27
C 72.9
(3)
P 		44
(-0.1)
P 		31
(-1.5)
A 		17.5
(-3)
M 		21.5
(-2.6)
M 		23.1
(-2.4)
A 		55
avr 48.5
(3) 		47.7
(2.8) 		28.3
(-1.2) 		22.9
(-2.3) 		27.3
(-1.4) 		19.6
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.577
Sequence Type Exemplar sequence
Representative Public ID F37D6.3 NCBI
Target Description F37D6.3 /REP_DB=WormBase Gene ID /WP=CE05820 /TR=Q20131 /GB=CAA99849.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060343 NCBI Caenorhabditis elegans F37D6.3 (F37D6.3) mRNA, complete cds. 11/11 None
SNAP00000007526 ENSEMBL cdna:SNAP chromosome:CEL140:I:10494837:10495445:1 11/11 None
GENEFINDER00000007529 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10494837:10496268:1 11/11 None
F37D6.3 ENSEMBL cdna:known chromosome:CEL140:I:10494837:10495445:1 gene:F37D6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10494767-10495376(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37D6.3
Entrez Gene 185425 Entrez gene
SwissProt Q20131 EMBL-EBI
WormBase CE05820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99849 Hypothetical protein F37D6.3 [Caenorhabditis elegans] ref|NP_492744.1| F37D6.3 [Caenorhabditis elegans] 2.0E-93
blast CAA99849 Hypothetical protein F37D6.3 [Caenorhabditis elegans] ref|NP_492744.1| F37D6.3 [Caenorhabditis elegans] 1.0E-89
Sequence
Target Sequence 
>C. ELEGANS:177742_AT
tttacgcgctgatcccaagagagttcttatggactgacgggtcttctgttcagtgtggac
tctgtcgccaaaacaacgcatctgtcacgcttcctcatgcgcccggagccataaggcact
tcaaacgacgccaccgaaagacatataattccttctctaaagaagttcggtatcaagact
accgggctcaaggcgaagctggacaagatcccaatttcgaatacaatcggtatccagtcc
aaaaccaacatatgatggctcaaggcccaggtgtctacccaatgttggctgctgccgctc
ctcaggagcaaaatcatcttcttggtgatcgcatctacgctggtgtctcccaaaactgca
tgggatatccacaaaatccgcaagaagggccacgtggacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACGCGCTGATCCCAAGAGAGTT 568 669 50 Antisense
TATGGACTGACGGGTCTTCTGTTCA 322 655 77 Antisense
TTCAGTGTGGACTCTGTCGCCAAAA 422 685 98 Antisense
GTCGCCAAAACAACGCATCTGTCAC 494 475 113 Antisense
GCCCGGAGCCATAAGGCACTTCAAA 544 285 150 Antisense
CTTCAAACGACGCCACCGAAAGACA 621 219 168 Antisense
ATCAAGACTACCGGGCTCAAGGCGA 13 25 221 Antisense
ATACAATCGGTATCCAGTCCAAAAC 641 23 270 Antisense
GTGTCTACCCAATGTTGGCTGCTGC 697 485 320 Antisense
TCATCTTCTTGGTGATCGCATCTAC 656 619 363 Antisense
TCCGCAAGAAGGGCCACGTGGACCA 533 595 426 Antisense
Sequence Source Affymetrix Proprietary Database