[Home] | [Total List]

[177740_s_at]

Description F16D3.4 /REP_DB=WormBase Gene ID /WP=CE09437 /TR=Q19493 /GB=CAB01496.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 45      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 72      6grp_total > 35      4grp_total > 31      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 526.1
(3)
P 		297.3
(-1.2)
P 		203
(-3)
P 		323.9
(-0.8)
P 		323
B 332.4
(0.8)
P 		285.9
(-1.8)
P 		264.7
(-3)
P 		372.2
(3)
P 		108
C 502.3
(3)
P 		314.3
(-3)
P 		365.5
(-1.4)
P 		385
(-0.7)
P 		188
avr 453.6
(3) 		299.2
(-2.3) 		277.7
(-3) 		360.4
(-0.2) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 409.5
(1.3)
P 		421.6
(1.7)
P 		410.6
(1.3)
P 		460.6
(3)
P 		282.3
(-3)
P 		394.1
(0.8)
P 		178
B 454
(0.6)
P 		504.7
(3)
P 		493.7
(2.5)
P 		380.5
(-3)
P 		392.8
(-2.4)
P 		457.9
(0.7)
P 		124
C 485.6
(1.9)
P 		514.5
(3)
P 		467.4
(1.3)
P 		351.4
(-3)
P 		447.7
(0.5)
P 		472.1
(1.4)
P 		163
avr 449.7
(1.3) 		480.3
(3) 		457.2
(1.7) 		397.5
(-1.7) 		374.3
(-3) 		441.4
(0.8) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 191.6
(3)
P 		64.5
(-2.3)
P 		53.1
(-2.8)
P 		47.4
(-3)
P 		144
B 106
(3)
P 		70.6
(-1.8)
P 		61.3
(-3)
P 		79.3
(-0.6)
P 		45
C 166.3
(3)
P 		90.4
(-1.5)
P 		127.4
(0.7)
P 		64.9
(-3)
P 		101
avr 154.6
(3) 		75.2
(-2.3) 		80.6
(-1.9) 		63.9
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 75.5
(-3)
P 		149.9
(3)
P 		89.4
(-1.9)
P 		116.8
(0.3)
P 		85.2
(-2.2)
P 		95.9
(-1.4)
P 		74
B 158
(1.9)
P 		168
(2.8)
P 		119.9
(-1.4)
P 		100.8
(-3)
P 		159.6
(2)
P 		170.8
(3)
P 		70
C 180
(3)
P 		157
(1.7)
P 		119
(-0.3)
P 		70.7
(-3)
P 		144.9
(1.1)
P 		158
(1.8)
P 		109
avr 137.8
(1) 		158.3
(3) 		109.4
(-1.7) 		96.1
(-3) 		129.9
(0.3) 		141.6
(1.4) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177740_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1176
Sequence Type Exemplar sequence
Representative Public ID F16D3.4 NCBI
Target Description F16D3.4 /REP_DB=WormBase Gene ID /WP=CE09437 /TR=Q19493 /GB=CAB01496.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059869 NCBI Caenorhabditis elegans F16D3.4 (F16D3.4) mRNA, complete cds. 11/11 None
SNAP00000036927 ENSEMBL cdna:SNAP chromosome:CEL140:I:8372122:8377679:-1 11/11 None
GENEFINDER00000036931 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8372349:8377679:-1 11/11 None
F16D3.4 ENSEMBL cdna:known chromosome:CEL140:I:8372087:8378042:-1 gene:F16D3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8372279-8377973(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16D3.4
Entrez Gene 172622 Entrez gene
SwissProt Q19493 EMBL-EBI
WormBase CE09437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01496 Hypothetical protein F16D3.4 [Caenorhabditis elegans] ref|NP_492270.1| F16D3.4 [Caenorhabditis elegans] 0.0
blast CAE60462 Hypothetical protein CBG04073 [Caenorhabditis briggsae] 0.0
blast NP_776619 tubulin-specific chaperone d [Bos taurus] gb|AAB17537.1| cofactor D [Bos taurus] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR007766 EMBL-EBI Beta-tubulin cofactor D 1.0E-126
Pfam IPR007766 EMBL-EBI Beta-tubulin cofactor D 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177740_S_AT
aaacctcttttagatcttggatccgagtattatgaacaattaatattgggtattgttgta
tcagcaggtggattggcagaaggaactcagaaaactgcaaagcaattgcttttagatcat
caaagagaaatttgtgagaataaaccgagattcgatcattttctatcgacatgtgctgat
ctttttcaacgagctcgtaaagtgaaccgaattgggaacagtttcatgcaaattctacca
caaatatttggaaatcttggaatttatgaacaatgtccagaaacgtctgaatcaattatt
gagatggtggatacaatgaaaacaatcgcagttagatcatcaatgatgtcacgtcagagg
ctatcgattgattcacttggagaattgttgaattgtgggaagaaaagtacagtatacaga
tctgcattaactatgatccttgacactcttaacagccaacaaccagttcttcgtaaatct
gccgccgagagactctacgagcatctttgctgtgccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCTCTTTTAGATCTTGGATCCG 512 123 3082 Antisense
GGGTATTGTTGTATCAGCAGGTGGA 365 497 3129 Antisense
GATCATTTTCTATCGACATGTGCTG 681 419 3235 Antisense
GTGCTGATCTTTTTCAACGAGCTCG 573 479 3254 Antisense
GATGTCACGTCAGAGGCTATCGATT 165 409 3426 Antisense
GCATTAACTATGATCCTTGACACTC 296 307 3505 Antisense
ATCCTTGACACTCTTAACAGCCAAC 613 39 3517 Antisense
AACAGCCAACAACCAGTTCTTCGTA 414 135 3532 Antisense
ACCAGTTCTTCGTAAATCTGCCGCC 203 87 3543 Antisense
TGCCGCCGAGAGACTCTACGAGCAT 485 585 3561 Antisense
CTACGAGCATCTTTGCTGTGCCGAG 14 227 3576 Antisense
Sequence Source Affymetrix Proprietary Database