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[177738_at]

Description ZK678.4 /REP_DB=WormBase Gene ID /WP=CE24734 /TR=Q94413 /GB=CAB01906.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 28      6grp_cgc > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 8
(-2.3)
A 		41.4
(3)
A 		3.5
(-3)
A 		37.7
(2.4)
A 		38
B 13.9
(-1.3)
A 		34
(3)
A 		5.7
(-3)
A 		12.6
(-1.5)
A 		28
C 65.2
(1.5)
A 		9.3
(-3)
A 		14.6
(-2.6)
A 		83.8
(3)
P 		75
avr 29
(0.4) 		28.2
(0.3) 		7.9
(-3) 		44.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 24.6
(-0.3)
A 		8.8
(-2.2)
A 		14.5
(-1.5)
A 		2.2
(-3)
A 		51.1
(3)
A 		4.8
(-2.7)
A 		49
B 30
(0.3)
A 		27.8
(-0)
A 		14.9
(-1.7)
A 		50.7
(3)
A 		6.6
(-2.8)
A 		5
(-3)
A 		46
C 8.8
(-2.4)
A 		48.3
(2.9)
A 		26.1
(-0.1)
A 		48.8
(3)
A 		9.6
(-2.3)
A 		4.6
(-3)
A 		44
avr 21.1
(0.4) 		28.3
(1.8) 		18.5
(-0.2) 		33.9
(3) 		22.4
(0.6) 		4.8
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.9
(-1.5)
A 		9
(3)
A 		0.9
(-3)
A 		5.5
(0.4)
A 		8
B 4.4
(-0.4)
A 		8.4
(3)
A 		1.3
(-3)
A 		2.7
(-1.8)
A 		7
C 21.6
(3)
A 		2.7
(-3)
A 		5.1
(-2.2)
A 		14.1
(0.6)
P 		19
avr 9.6
(3) 		6.7
(0.6) 		2.4
(-3) 		7.4
(1.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.5
(-1.4)
A 		3.1
(-2)
A 		3.2
(-1.9)
A 		0.6
(-3)
A 		15.4
(3)
A 		1.2
(-2.8)
A 		15
B 10.4
(1.4)
A 		9.3
(0.9)
A 		3.6
(-2.1)
A 		13.4
(3)
A 		2.7
(-2.6)
A 		1.9
(-3)
A 		12
C 3.2
(-2.2)
A 		14.7
(3)
A 		6.6
(-0.7)
A 		9.8
(0.8)
A 		3.1
(-2.3)
A 		1.5
(-3)
A 		13
avr 6
(0.6) 		9
(3) 		4.5
(-0.6) 		7.9
(2.1) 		7.1
(1.5) 		1.5
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17326
Sequence Type Exemplar sequence
Representative Public ID ZK678.4 NCBI
Target Description ZK678.4 /REP_DB=WormBase Gene ID /WP=CE24734 /TR=Q94413 /GB=CAB01906.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078191 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-9) (srxa-9) mRNA, complete cds. 11/11 None
SNAP00000038618 ENSEMBL cdna:SNAP chromosome:CEL140:X:15751590:15752056:1 9/11 None
ZK678.4 ENSEMBL cdna:known chromosome:CEL140:X:15749970:15752056:1 gene:ZK678.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15749969-15752056(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-9
Ensembl ZK678.4
Entrez Gene 191394 Entrez gene
SwissProt Q94413 EMBL-EBI
WormBase CE38259 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01906 Hypothetical protein ZK678.4 [Caenorhabditis elegans] ref|NP_510592.2| Serpentine Receptor, class XA family member (srxa-9) [Caenorhabditis elegans] 1.0E-177
blast CAB01906 Hypothetical protein ZK678.4 [Caenorhabditis elegans] ref|NP_510592.2| Serpentine Receptor, class XA family member (srxa-9) [Caenorhabditis elegans] 1.0E-93
blast CAA94169 Hypothetical protein R04D3.10 [Caenorhabditis elegans] emb|CAA90548.2| Hypothetical protein R04D3.10 [Caenorhabditis elegans] ref|NP_510216.2| Serpentine Receptor, class XA family member (srxa-8) [Caenorhabditis elegans] 4.0E-78
blast CAE63360 Hypothetical protein CBG07768 [Caenorhabditis briggsae] 2.0E-73
blast CAB01906 Hypothetical protein ZK678.4 [Caenorhabditis elegans] ref|NP_510592.2| Serpentine Receptor, class XA family member (srxa-9) [Caenorhabditis elegans] 2.0E-72
blast CAA94169 Hypothetical protein R04D3.10 [Caenorhabditis elegans] emb|CAA90548.2| Hypothetical protein R04D3.10 [Caenorhabditis elegans] ref|NP_510216.2| Serpentine Receptor, class XA family member (srxa-8) [Caenorhabditis elegans] 2.0E-46
blast CAE63360 Hypothetical protein CBG07768 [Caenorhabditis briggsae] 2.0E-35
blast CAA94169 Hypothetical protein R04D3.10 [Caenorhabditis elegans] emb|CAA90548.2| Hypothetical protein R04D3.10 [Caenorhabditis elegans] ref|NP_510216.2| Serpentine Receptor, class XA family member (srxa-8) [Caenorhabditis elegans] 4.0E-31
blast CAE63360 Hypothetical protein CBG07768 [Caenorhabditis briggsae] 5.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 1.3E-10
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 4.7E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510592.2 6 22-44,64-86,106-128,160-179,226-245,260-278
ZK678.4 3 29-48,95-114,129-147
SNAP00000038618 2 40-59,74-92
Sequence
Target Sequence 
>C. ELEGANS:177738_AT
tttgccgttatcctgtatgtttgtcaatattggaataattttacatctccgcttcaaacg
cgaaggcacatacgaaatgatcaagaaagtgttcagtaaacataagacgataactccatt
cgcagtaccacttcaaaacacaactctttcaaaacttcaagccaggcgtgatctcatcat
gatgcggcaaaccgtttcagtggcggtctacctctcaatttatgaactaggagcattatt
aatcagagtttttccgacattctacgcaggccttccggatttggtgcataaaagttattt
ttacatccgctacgagtcaattccacccatgacttttttcgtttactatttggaaaccgg
aagcacgcgtcgaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCGTTATCCTGTATGTTTGTC 64 669 102 Antisense
ATAATTTTACATCTCCGCTTCAAAC 271 25 136 Antisense
GACGATAACTCCATTCGCAGTACCA 276 379 207 Antisense
TTCAAGCCAGGCGTGATCTCATCAT 438 685 257 Antisense
GCGGCAAACCGTTTCAGTGGCGGTC 563 291 285 Antisense
GCGGTCTACCTCTCAATTTATGAAC 410 293 304 Antisense
CAGAGTTTTTCCGACATTCTACGCA 157 207 345 Antisense
GGCCTTCCGGATTTGGTGCATAAAA 5 543 370 Antisense
TACATCCGCTACGAGTCAATTCCAC 627 643 403 Antisense
TCAATTCCACCCATGACTTTTTTCG 344 633 418 Antisense
GAAACCGGAAGCACGCGTCGAATGC 358 359 454 Antisense
Sequence Source Affymetrix Proprietary Database