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[177737_at]

Description E03A3.6 /REP_DB=WormBase Gene ID /WP=CE00945 /TR=Q19045 /GB=CAA86231.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 53      6grp_cgc > 52      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 69.3
(3)
A 		31.5
(-0.8)
A 		41.6
(0.2)
A 		9.6
(-3)
A 		60
B 116.3
(2.5)
A 		124.5
(3)
A 		43.5
(-1.5)
A 		15.7
(-3)
A 		109
C 146.6
(3)
A 		61.3
(-0.8)
A 		48.8
(-1.4)
A 		12.8
(-3)
A 		134
avr 110.7
(3) 		72.4
(0.7) 		44.6
(-1) 		12.7
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 68.4
(0.8)
A 		101
(3)
A 		15
(-2.8)
A 		92.7
(2.4)
A 		12.7
(-3)
A 		27
(-2)
A 		88
B 15.9
(-1.8)
A 		60.1
(3)
A 		28.1
(-0.4)
A 		28
(-0.5)
A 		4.3
(-3)
A 		9.6
(-2.4)
A 		56
C 23.7
(0.3)
A 		36.9
(3)
A 		23
(0.2)
A 		7.4
(-3)
A 		25.9
(0.8)
A 		12
(-2.1)
A 		30
avr 36
(-0.5) 		66
(3) 		22
(-2.1) 		42.7
(0.3) 		14.3
(-3) 		16.2
(-2.8) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 25.2
(3)
A 		6.8
(-1.6)
A 		10.9
(-0.6)
A 		1.4
(-3)
A 		24
B 37.1
(3)
A 		30.8
(1.9)
A 		10.1
(-1.8)
A 		3.4
(-3)
A 		34
C 48.5
(3)
A 		17.6
(-1)
A 		17
(-1.1)
A 		2.2
(-3)
A 		46
avr 36.9
(3) 		18.4
(-0.2) 		12.7
(-1.2) 		2.3
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 12.6
(-1.3)
A 		35.9
(3)
A 		3.3
(-3)
A 		23.5
(0.7)
A 		3.8
(-2.9)
A 		6.6
(-2.4)
A 		33
B 5.5
(-1.8)
A 		20
(3)
A 		6.8
(-1.3)
A 		7.4
(-1.1)
A 		1.7
(-3)
A 		3.6
(-2.4)
A 		18
C 8.8
(1.5)
A 		11.3
(3)
A 		5.9
(-0.3)
A 		1.5
(-3)
A 		8.4
(1.2)
A 		4
(-1.5)
A 		10
avr 9
(-1.5) 		22.4
(3) 		5.3
(-2.8) 		10.8
(-0.9) 		4.6
(-3) 		4.7
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6071
Sequence Type Exemplar sequence
Representative Public ID E03A3.6 NCBI
Target Description E03A3.6 /REP_DB=WormBase Gene ID /WP=CE00945 /TR=Q19045 /GB=CAA86231.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065413(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065413 NCBI Caenorhabditis elegans UNCoordinated family member (unc-79) (unc-79) mRNA, complete cds. 9/11 None
GENEFINDER00000016646 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4069182:4076104:1 11/11 None
E03A3.6 ENSEMBL cdna:known chromosome:CEL140:III:4069182:4074146:1 gene:E03A3.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4069181-4074146(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-79
Ensembl E03A3.6
Entrez Gene 3565180 Entrez gene
SwissProt Q19045 EMBL-EBI
WormBase CE30742 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26938.1.S1_S_AT similar to CG5237-PA cfa
Protein Similarities
Method ID Description E-Value
blast CAA86231 Hypothetical protein E03A3.6 [Caenorhabditis elegans] ref|NP_497814.2| UNCoordinated family member (unc-79) [Caenorhabditis elegans] 0.0
blast CAE72889 Hypothetical protein CBG20202 [Caenorhabditis briggsae] 0.0
blast CAA86234 Hypothetical protein E03A3.7 [Caenorhabditis elegans] ref|NP_497815.1| E03A3.7 [Caenorhabditis elegans] 1.0E-126
blast XP_617697 PREDICTED: similar to CG5237-PA [Bos taurus] 3.0E-85
Sequence
Target Sequence 
>C. ELEGANS:177737_AT
atgtcagtgcatgtggtcctagtagatacactggtgctccagatgaagctcaatgattct
gatcgatcaatgacacctgccctcacagataaactttttgaatgtatgcagctattagta
tcaattccaatacgcgcggtgccacattcctgtcatgatccagagttggatgggtttgca
gattgtcagcaatgtcagcaaacagcatttgtgcatcaaatggtgatgaatattacgcag
aaagtgtgcccaaagcgggaagttgcaattattaacattggttaccataaattttataat
aattacttccttgcaaaacctctagttaaactcactccgatgagcttccagaccaccgtc
gacgaggatccaaactatgatgaacagacgactgacacgccaactggtcctggaagtaca
ttattatcacctttaactgagtcgggaagcaaaggaacatctccgggaacgtctgctccg
tcaaggccatttccagaacatcttcaagctcaaacgatgtgtgttgctcaggcttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCAGTGCATGTGGTCCTAGTAG 444 47 2026 Antisense
TCTGATCGATCAATGACACCTGCCC 249 609 2083 Antisense
ACACCTGCCCTCACAGATAAACTTT 436 109 2098 Antisense
GCCACATTCCTGTCATGATCCAGAG 285 279 2166 Antisense
TAATTACTTCCTTGCAAAACCTCTA 68 633 2325 Antisense
AACTCACTCCGATGAGCTTCCAGAC 231 141 2354 Antisense
ACCACCGTCGACGAGGATCCAAACT 238 37 2377 Antisense
ACACGCCAACTGGTCCTGGAAGTAC 463 97 2420 Antisense
AAGGAACATCTCCGGGAACGTCTGC 647 159 2477 Antisense
CTCCGTCAAGGCCATTTCCAGAACA 290 231 2501 Antisense
ACGATGTGTGTTGCTCAGGCTTGTG 9 95 2539 Antisense
Sequence Source Affymetrix Proprietary Database