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[177736_at]

Description T01H3.4 /REP_DB=WormBase Gene ID /WP=CE03598 /TR=Q22090 /GB=CAA92688.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 26.3
(-3)
A 		30.1
(-2.8)
A 		49.6
(-1.5)
A 		122.2
(3)
A 		96
B 7.3
(-3)
A 		34.9
(-1.1)
A 		20.4
(-2.1)
A 		94.6
(3)
M 		87
C 39
(-1.8)
A 		25.6
(-3)
A 		28.5
(-2.7)
A 		92
(3)
A 		66
avr 24.2
(-3) 		30.2
(-2.5) 		32.8
(-2.3) 		102.9
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 655
1 2 3 4 5 6 range
A 29.5
(-3)
A 		40
(-2.9)
A 		34.6
(-3)
A 		149.8
(-1.9)
P 		496.1
(1.3)
P 		684.8
(3)
P 		655
B 79.8
(-2.6)
A 		55.2
(-2.8)
A 		35.2
(-3)
A 		120.1
(-2.2)
A 		466
(1.2)
P 		657.3
(3)
P 		622
C 53.6
(-2.9)
A 		44.3
(-3)
A 		49.6
(-2.9)
A 		167.7
(-1.7)
P 		523.4
(2.2)
P 		599.1
(3)
P 		555
avr 54.3
(-2.9) 		46.5
(-2.9) 		39.8
(-3) 		145.9
(-2) 		495.2
(1.5) 		647.1
(3) 		607
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.6
(-1.4)
A 		6.5
(-3)
A 		13
(0.4)
A 		17.9
(3)
A 		11
B 2.3
(-3)
A 		8.6
(-0.9)
A 		4.7
(-2.2)
A 		20.2
(3)
M 		18
C 12.9
(1.1)
A 		7.4
(-3)
A 		9.9
(-1.1)
A 		15.5
(3)
A 		8
avr 8.3
(-2.5) 		7.5
(-3) 		9.2
(-2) 		17.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 5.4
(-3)
A 		14.2
(-2.7)
A 		7.5
(-2.9)
A 		38
(-1.8)
P 		149.7
(2.4)
P 		166.7
(3)
P 		161
B 27.8
(-2.5)
A 		18.4
(-2.8)
A 		8.6
(-3)
A 		31.8
(-2.4)
A 		189.3
(1.6)
P 		245.1
(3)
P 		237
C 19.9
(-2.8)
A 		13.5
(-3)
A 		12.6
(-3)
A 		33.7
(-2.3)
P 		169.4
(2)
P 		200.6
(3)
P 		188
avr 17.7
(-2.8) 		15.4
(-2.8) 		9.6
(-3) 		34.5
(-2.2) 		169.5
(1.9) 		204.1
(3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4557
Sequence Type Exemplar sequence
Representative Public ID T01H3.4 NCBI
Target Description T01H3.4 /REP_DB=WormBase Gene ID /WP=CE03598 /TR=Q22090 /GB=CAA92688.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063260 NCBI Caenorhabditis elegans T01H3.4 (T01H3.4) mRNA, complete cds. 11/11 None
SNAP00000018639 ENSEMBL cdna:SNAP chromosome:CEL140:II:7880743:7884445:1 11/11 None
GENEFINDER00000018644 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7880743:7882445:1 11/11 None
T01H3.4.2 ENSEMBL cdna:known chromosome:CEL140:II:7880732:7882672:1 gene:T01H3.4 11/11 None
T01H3.4.1 ENSEMBL cdna:known chromosome:CEL140:II:7880734:7882672:1 gene:T01H3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7880739-7882442(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01H3.4
Entrez Gene 174273 Entrez gene
SwissProt Q22090 EMBL-EBI
WormBase CE03598 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92688 Hypothetical protein T01H3.4 [Caenorhabditis elegans] ref|NP_495661.1| T01H3.4 [Caenorhabditis elegans] 0.0
blast CAE59825 Hypothetical protein CBG03297 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495661.1 2 377-399,406-428
T01H3.4.2 2 377-399,406-428
T01H3.4.1 2 377-399,406-428
SNAP00000018639 2 377-399,406-428
GENEFINDER00000018644 2 377-399,406-428
Sequence
Target Sequence 
>C. ELEGANS:177736_AT
tacagttcgcaccagcatcgatgtcgactccgagtccaaaacagatatcgacgagaactt
gaccgaagaaggcgaagtgttcgagcaaggtgattgcacaaaacaaggattcaatttcga
aattgaggacgaaccgcagtctcaaaatttggacttctcgataatcaacgactcgaaatt
ttctaaaaatgatcgcgttttcgagattttcttgatcaacgacgaaactccaaagaaaac
agtttacagcacctatggacaacttctctatactggaaaaagacttcgttctgccgttca
gctctcgtttattccactttactacatctacctgttgttctgcatggttctccagttcac
catgaagctttttgggccactcaagttcgcatcacttctgcccagccctgcttttctgta
cttctatttccaccactggacctttttcaacgctacgaaaagtcttctgatgttgggata
caagccaaacttcgagttcaaagaatgtgtcaacaactgcgtgaaacattatcgagagtt
ccgtaagaaagatgttcgtctcttctcatggcaaaactctctgactggaaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTTCGCACCAGCATCGATGTC 626 641 849 Antisense
GAGGACGAACCGCAGTCTCAAAATT 540 395 973 Antisense
CAGCACCTATGGACAACTTCTCTAT 258 205 1095 Antisense
GAAAAAGACTTCGTTCTGCCGTTCA 594 353 1124 Antisense
TTATTCCACTTTACTACATCTACCT 401 677 1157 Antisense
ACTACATCTACCTGTTGTTCTGCAT 202 101 1169 Antisense
TTGTTCTGCATGGTTCTCCAGTTCA 219 707 1183 Antisense
GAAGCTTTTTGGGCCACTCAAGTTC 502 341 1212 Antisense
TGCTTTTCTGTACTTCTATTTCCAC 575 579 1257 Antisense
TTCGTCTCTTCTCATGGCAAAACTC 191 695 1403 Antisense
GGCAAAACTCTCTGACTGGAAACCC 423 531 1418 Antisense
Sequence Source Affymetrix Proprietary Database