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[177735_at]

Description F02H6.2 /REP_DB=WormBase Gene ID /WP=CE17626 /TR=O62129 /GB=CAB05169.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 3.5
(-2.9)
A 		2.1
(-3)
A 		4.7
(-2.8)
A 		71.3
(3)
A 		69
B 4
(-2.5)
A 		5.2
(3)
A 		4.2
(-1.6)
A 		3.9
(-3)
A 		1
C 1.4
(-3)
A 		1.9
(-2.9)
A 		5.2
(-2.1)
A 		27.8
(3)
A 		26
avr 3
(-3) 		3.1
(-3) 		4.7
(-2.7) 		34.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 4.4
(-2.7)
A 		2.7
(-3)
A 		33.8
(2.3)
A 		5.9
(-2.5)
A 		7.3
(-2.2)
A 		38.2
(3)
A 		36
B 2.7
(-3)
A 		9.3
(-2.4)
A 		2.2
(-3)
A 		11.9
(-2.2)
A 		38.4
(-0.1)
A 		76.7
(3)
P 		75
C 1.3
(-3)
A 		8
(-2.1)
A 		6
(-2.4)
A 		41.7
(2.1)
A 		25
(0)
A 		48.4
(3)
A 		47
avr 2.8
(-3) 		6.7
(-2.5) 		14
(-1.7) 		19.8
(-1) 		23.6
(-0.6) 		54.4
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-2.5)
A 		0.5
(-3)
A 		1.2
(-2.6)
A 		10.4
(3)
A 		10
B 1.3
(3)
A 		1.3
(3)
A 		1
(-0.6)
A 		0.8
(-3)
A 		1
C 0.5
(-3)
A 		0.6
(-2.9)
A 		1.8
(-1.1)
A 		4.7
(3)
A 		4
avr 1
(-2.7) 		0.8
(-3) 		1.3
(-2.3) 		5.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1
(-2.9)
A 		7.4
(1.7)
A 		1.5
(-2.5)
A 		2.2
(-2)
A 		9.3
(3)
A 		9
B 0.9
(-2.9)
A 		3.1
(-2.4)
A 		0.5
(-3)
A 		3.2
(-2.4)
A 		15.6
(0.2)
A 		28.6
(3)
P 		28
C 0.5
(-3)
A 		2.4
(-2.3)
A 		1.5
(-2.6)
A 		8.4
(0)
A 		8.1
(-0.1)
A 		16.2
(3)
A 		16
avr 0.7
(-3) 		2.2
(-2.5) 		3.1
(-2.2) 		4.4
(-1.7) 		8.6
(-0.3) 		18
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9981
Sequence Type Exemplar sequence
Representative Public ID F02H6.2 NCBI
Target Description F02H6.2 /REP_DB=WormBase Gene ID /WP=CE17626 /TR=O62129 /GB=CAB05169.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070323 NCBI Caenorhabditis elegans F02H6.2 (F02H6.2) mRNA, complete cds. 11/11 None
SNAP00000026607 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14197055:14198459:1 11/11 None
GENEFINDER00000026633 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14197301:14198459:1 11/11 None
F02H6.2 ENSEMBL cdna:known chromosome:CEL140:IV:14197235:14198459:1 gene:F02H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14197240-14198465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02H6.2
Entrez Gene 184102 Entrez gene
SwissProt O62129 EMBL-EBI
WormBase CE17626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05169 Hypothetical protein F02H6.2 [Caenorhabditis elegans] ref|NP_502724.1| F02H6.2 [Caenorhabditis elegans] 1.0E-176
blast CAB05169 Hypothetical protein F02H6.2 [Caenorhabditis elegans] ref|NP_502724.1| F02H6.2 [Caenorhabditis elegans] 1.0E-163
blast CAB05237 Hypothetical protein K01G12.3 [Caenorhabditis elegans] ref|NP_502723.1| K01G12.3 [Caenorhabditis elegans] 3.0E-61
blast CAB05237 Hypothetical protein K01G12.3 [Caenorhabditis elegans] ref|NP_502723.1| K01G12.3 [Caenorhabditis elegans] 4.0E-59
blast CAB05237 Hypothetical protein K01G12.3 [Caenorhabditis elegans] ref|NP_502723.1| K01G12.3 [Caenorhabditis elegans] 8.0E-59
blast XP_625679 hypothetical protein cgd4_770 [Cryptosporidium parvum] gb|EAK87658.1| Low complexity protein with large Glu repeat [Cryptosporidium parvum] 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177735_AT
aggaacgtgagagcccttccaatgacagagaagaactacgaaattggctcagtttgatgc
tggctcaacatgaagtgttattgataagaactgacgagtgcgaggaaacatttgatatca
aacatcacagaatgatccagcaacgaataaagaagaatcttgaggaaatgctggcagtgg
aaaatgaattcgacaacgatttaaatttcaaactttttcgtcgattgctcatcgaggaag
aaaaaacccaattttcgcgtactattctgtataatgagataatgcaacaaaaccaccgag
atggagatgtgctattcggagaaattaccaatacgctcaaaaaaatacttcatcaaattc
atcatgaagttttaggattcgaagaatattattcagagaagcatcctgaaaaagatgagc
aaaaggatgaggatttgaaaaatgaacctgcggctagatctgaagatccacaagactcga
gggaagatgttgggaatgagccttcaagtagcaattcagcatcgaatattggagatcaaa
ccggagaagcttcacaagaaccaccacaaagatcactaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAACGTGAGAGCCCTTCCAATGA 335 17 314 Antisense
GGCTCAGTTTGATGCTGGCTCAACA 448 501 359 Antisense
GAATCTTGAGGAAATGCTGGCAGTG 683 327 468 Antisense
AAACTTTTTCGTCGATTGCTCATCG 133 129 523 Antisense
ACCCAATTTTCGCGTACTATTCTGT 201 35 559 Antisense
GATAATGCAACAAAACCACCGAGAT 203 423 591 Antisense
GATGGAGATGTGCTATTCGGAGAAA 541 407 613 Antisense
GAACCTGCGGCTAGATCTGAAGATC 152 347 757 Antisense
GAGCCTTCAAGTAGCAATTCAGCAT 596 385 811 Antisense
GGAGAAGCTTCACAAGAACCACCAC 82 519 856 Antisense
GAACCACCACAAAGATCACTAAAGC 692 343 871 Antisense
Sequence Source Affymetrix Proprietary Database