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[177733_at]

Description F36D3.3 /REP_DB=WormBase Gene ID /WP=CE15967 /TR=O45459 /GB=CAB04315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 39      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 71.5
(3)
A 		28.7
(-1.1)
A 		9.6
(-3)
A 		38.8
(-0.2)
A 		62
B 98
(3)
A 		14.3
(-2.7)
A 		26.6
(-1.9)
A 		10
(-3)
A 		88
C 59.6
(3)
A 		42
(0.2)
A 		21.3
(-3)
A 		53.5
(2)
A 		38
avr 76.4
(3) 		28.3
(-2) 		19.2
(-3) 		34.1
(-1.4) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 104.4
(3)
A 		92.7
(2.3)
A 		83.4
(1.7)
A 		4.8
(-3)
A 		55.7
(0.1)
A 		32.2
(-1.3)
A 		100
B 69.7
(0.3)
P 		69.9
(0.3)
A 		115
(3)
P 		59.1
(-0.4)
A 		16.1
(-3)
A 		44.7
(-1.3)
A 		99
C 72.2
(0.2)
M 		119.2
(3)
A 		85.2
(1)
A 		32.7
(-2.1)
A 		18.1
(-3)
A 		70.3
(0.1)
A 		101
avr 82.1
(1.8) 		93.9
(2.9) 		94.5
(3) 		32.2
(-2.8) 		30
(-3) 		49.1
(-1.2) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 26
(3)
A 		6.2
(-2.1)
A 		2.5
(-3)
A 		5.7
(-2.2)
A 		24
B 31.3
(3)
A 		3.5
(-2.7)
A 		6.2
(-2.2)
A 		2.1
(-3)
A 		29
C 19.7
(3)
A 		12.1
(-0.7)
A 		7.4
(-3)
A 		9
(-2.2)
A 		12
avr 25.7
(3) 		7.3
(-2.4) 		5.4
(-3) 		5.6
(-2.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 19.2
(0.4)
A 		33
(3)
A 		18.2
(0.2)
A 		1.2
(-3)
A 		16.8
(-0.1)
A 		7.8
(-1.8)
A 		32
B 24.2
(2)
P 		23.3
(1.7)
A 		27.9
(3)
P 		15.7
(-0.4)
A 		6.6
(-3)
A 		16.7
(-0.2)
A 		21
C 26.8
(1.1)
M 		36.4
(3)
A 		21.7
(0.1)
A 		6.6
(-2.9)
A 		5.9
(-3)
A 		23.5
(0.5)
A 		31
avr 23.4
(1.1) 		30.9
(3) 		22.6
(0.8) 		7.8
(-3) 		9.8
(-2.5) 		16
(-0.9) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13429
Sequence Type Exemplar sequence
Representative Public ID F36D3.3 NCBI
Target Description F36D3.3 /REP_DB=WormBase Gene ID /WP=CE15967 /TR=O45459 /GB=CAB04315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074779 NCBI Caenorhabditis elegans Serpentine Receptor, class R family member (srr-3) (srr-3) mRNA, complete cds. 11/11 None
SNAP00000025146 ENSEMBL cdna:SNAP chromosome:CEL140:V:16509522:16511287:-1 11/11 None
GENEFINDER00000025162 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16508573:16511287:-1 11/11 None
F36D3.3 ENSEMBL cdna:known chromosome:CEL140:V:16509522:16511287:-1 gene:F36D3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16509521-16511287(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srr-3
Ensembl F36D3.3
Entrez Gene 185351 Entrez gene
SwissProt O45459 EMBL-EBI
WormBase CE15967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04315 Hypothetical protein F36D3.3 [Caenorhabditis elegans] ref|NP_507180.1| Serpentine Receptor, class R family member (srr-3) [Caenorhabditis elegans] 0.0
blast CAB04849 Hypothetical protein T26H2.8 [Caenorhabditis elegans] ref|NP_507735.1| Serpentine Receptor, class R family member (srr-2) [Caenorhabditis elegans] 1.0E-126
blast CAB04849 Hypothetical protein T26H2.8 [Caenorhabditis elegans] ref|NP_507735.1| Serpentine Receptor, class R family member (srr-2) [Caenorhabditis elegans] 1.0E-125
blast CAE56200 Hypothetical protein CBG23824 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507180.1 7 42-64,79-96,133-155,170-192,250-272,277-299,361-380
F36D3.3 7 42-64,79-96,133-155,170-192,250-272,277-299,361-380
SNAP00000025146 7 42-64,79-96,133-155,170-192,250-272,277-299,361-380
GENEFINDER00000025162 6 42-64,79-96,133-155,170-192,250-272,277-299
Sequence
Target Sequence 
>C. ELEGANS:177733_AT
gatgctccggttatgattctttgtgcatatgcaaacttccttcatctcccaattcatgaa
cttattcatactgcatttgcaagagaattccgagttttcaatgatgaactagagaacgct
tcgaagaataaagaattgcttaaccctcaaactttccaaagatttgccgatcgtcaaatt
aaaatgttcgaatgcataaatccattgaccgaacgaatgaatcgacttatggcctttgca
ccacttttcatacttactgctctaacaaacgtgctgtaccttgtgacaaacttgagatct
gcaactcatacattatacttcatttgcatggtcggaatgctgatatcatgtattataata
tcaaagattcttctctatcctccagctttagttcaggaagctatgctccacacgtctact
gttcttatgaacgaccaattcattcaccattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTCCGGTTATGATTCTTTGTG 360 413 535 Antisense
GCATATGCAAACTTCCTTCATCTCC 176 309 559 Antisense
TGCTTAACCCTCAAACTTTCCAAAG 272 557 671 Antisense
TGAATCGACTTATGGCCTTTGCACC 523 573 752 Antisense
ACCACTTTTCATACTTACTGCTCTA 241 85 774 Antisense
AACGTGCTGTACCTTGTGACAAACT 170 143 802 Antisense
ATCAAAGATTCTTCTCTATCCTCCA 341 27 894 Antisense
CTCTATCCTCCAGCTTTAGTTCAGG 490 229 907 Antisense
GTTCAGGAAGCTATGCTCCACACGT 673 443 925 Antisense
CTCCACACGTCTACTGTTCTTATGA 468 235 940 Antisense
GAACGACCAATTCATTCACCATTCC 622 347 963 Antisense
Sequence Source Affymetrix Proprietary Database