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[177732_s_at]

Description F58G6.6 /REP_DB=WormBase Gene ID /WP=CE25923 /TR=Q21007 /GB=CAA92468.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 14      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 47
(1.1)
P 		1.3
(-3)
A 		42
(0.7)
A 		67.5
(3)
P 		66
B 70.1
(3)
P 		63.3
(1.8)
A 		36.4
(-3)
P 		49.5
(-0.7)
P 		34
C 67.6
(-0.4)
P 		26.5
(-2.7)
A 		20.2
(-3)
A 		129.6
(3)
P 		109
avr 61.6
(0.6) 		30.4
(-3) 		32.9
(-2.7) 		82.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 68.6
(1.3)
P 		47.5
(-1.6)
P 		81.1
(3)
P 		37.1
(-3)
A 		49.3
(-1.3)
M 		53.3
(-0.8)
A 		44
B 35.8
(1.1)
A 		44.4
(2.2)
P 		50.4
(3)
P 		4.8
(-3)
A 		18.4
(-1.2)
A 		26.5
(-0.1)
P 		46
C 59.2
(0.5)
P 		75.3
(3)
P 		43.5
(-1.8)
A 		39
(-2.5)
A 		35.9
(-3)
M 		43.7
(-1.8)
P 		39
avr 54.5
(2.3) 		55.7
(2.5) 		58.3
(3) 		27
(-3) 		34.5
(-1.6) 		41.2
(-0.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.1
(3)
P 		0.3
(-3)
A 		11
(0.8)
A 		9.9
(0.4)
P 		17
B 22.3
(3)
P 		15.6
(0.1)
A 		8.4
(-3)
P 		10.6
(-2.1)
P 		14
C 22.4
(3)
P 		7.6
(-2.8)
A 		7
(-3)
A 		21.8
(2.8)
P 		15
avr 20.6
(3) 		7.8
(-3) 		8.8
(-2.5) 		14.1
(-0) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 12.7
(-0.6)
P 		16.9
(2.4)
P 		17.7
(3)
P 		9.4
(-3)
A 		14.9
(1)
M 		13
(-0.4)
A 		8
B 12.5
(2)
A 		14.8
(3)
P 		12.2
(1.8)
P 		1.3
(-3)
A 		7.5
(-0.2)
A 		9.9
(0.8)
P 		14
C 21.9
(2.6)
P 		23
(3)
P 		11.1
(-1.7)
A 		7.8
(-3)
A 		11.6
(-1.5)
M 		14.6
(-0.3)
P 		15
avr 15.7
(1.8) 		18.2
(3) 		13.7
(0.8) 		6.2
(-3) 		11.3
(-0.5) 		12.5
(0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177732_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9136
Sequence Type Exemplar sequence
Representative Public ID F58G6.6 NCBI
Target Description F58G6.6 /REP_DB=WormBase Gene ID /WP=CE25923 /TR=Q21007 /GB=CAA92468.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069309 NCBI Caenorhabditis elegans DEgenerin Like family member (del-2) (del-2) mRNA, complete cds. 11/11 None
SNAP00000018760 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9637187:9639164:-1 11/11 None
GENEFINDER00000018763 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9637187:9639164:-1 11/11 None
F58G6.6 ENSEMBL cdna:known chromosome:CEL140:IV:9636957:9641980:-1 gene:F58G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9637192-9641986(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol del-2
Ensembl F58G6.6
Entrez Gene 177796 Entrez gene
SwissProt Q21007 EMBL-EBI
WormBase CE25923 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB97237 Hypothetical protein F58G6.6 [Caenorhabditis elegans] emb|CAA92468.2| Hypothetical protein F58G6.6 [Caenorhabditis elegans] ref|NP_501710.1| DEgenerin Like family member (del-2) [Caenorhabditis elegans] 0.0
blast T26295 hypothetical protein W09C2.4 - Caenorhabditis elegans 0.0
blast CAE72794 Hypothetical protein CBG20068 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177732_S_AT
gatgagcctctggaaatcacagatcaaactgttgaaaccagattttttgagttggaaact
actaaaaatcttgaaaaaattaatagaggaaccactacttcggaacacggaaacattctt
attaaaacaactgcatcacaaactccagtgtcacaagaagttgtacaactggtcaactac
gaaccaattaatttcacgaaagctcaaagcgacagaaattttgatgaaaaggaaaatatg
atccgtgcattttcttttaaattgtctgaaagtttctataaggaccttaaaattttggta
gttgaaagagatcgagcgaaggaagctatggacattttgccagcaaaaacgatgaaagaa
ttgagcgaagagtgtaattattatcaaacgcggtaccgtgtgagaatcgaacagaataaa
gaaaaattagatcgtcgaattgaagaagtttggaagaaactcctaaaaatgccgattgaa
tctcaagaagttattgattttatcagtgtagctcacagtgagctcttgactttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGCCTCTGGAAATCACAGATC 570 411 1198 Antisense
TAGAGGAACCACTACTTCGGAACAC 457 651 1281 Antisense
TGCATCACAAACTCCAGTGTCACAA 300 579 1329 Antisense
TTGTACAACTGGTCAACTACGAACC 652 705 1358 Antisense
GATCCGTGCATTTTCTTTTAAATTG 363 415 1437 Antisense
GAAGCTATGGACATTTTGCCAGCAA 415 341 1519 Antisense
TAATTATTATCAAACGCGGTACCGT 402 633 1572 Antisense
ACGCGGTACCGTGTGAGAATCGAAC 123 87 1585 Antisense
GAAACTCCTAAAAATGCCGATTGAA 19 357 1653 Antisense
GATTTTATCAGTGTAGCTCACAGTG 344 429 1693 Antisense
GCTCACAGTGAGCTCTTGACTTTGA 298 301 1708 Antisense
Sequence Source Affymetrix Proprietary Database