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[177729_at]

Description E01G4.6 /REP_DB=WormBase Gene ID /WP=CE15755 /TR=O02239 /GB=CAB04387.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 3.2
(-3)
A 		58.6
(3)
A 		34.2
(0.4)
A 		2.9
(-3)
A 		56
B 14.9
(-3)
A 		43.2
(0.6)
A 		61.6
(3)
A 		16.1
(-2.8)
A 		47
C 9.2
(-3)
A 		82.1
(3)
A 		19.5
(-2.2)
A 		37.7
(-0.7)
A 		73
avr 9.1
(-3) 		61.3
(3) 		38.4
(0.4) 		18.9
(-1.9) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2000
1 2 3 4 5 6 range
A 6.9
(-3)
A 		11.8
(-3)
A 		19
(-3)
A 		870.3
(-0.1)
P 		1792.4
(3)
P 		386.4
(-1.7)
P 		1786
B 12.4
(-3)
A 		23.8
(-3)
A 		61.9
(-2.8)
A 		719.9
(-0.5)
P 		1692.3
(3)
P 		354.2
(-1.8)
P 		1680
C 22.6
(-3)
A 		15
(-3)
A 		9.8
(-3)
A 		553.5
(-1.4)
P 		2006.9
(3)
P 		289.3
(-2.2)
P 		1997
avr 14
(-3) 		16.9
(-3) 		30.2
(-2.9) 		714.6
(-0.7) 		1830.5
(3) 		343.3
(-1.9) 		1817
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.2
(-2.6)
A 		12.7
(3)
A 		8.9
(1.1)
A 		0.4
(-3)
A 		12
B 4.8
(-2.2)
A 		10.7
(1)
A 		14.3
(3)
A 		3.4
(-3)
A 		11
C 3
(-3)
A 		23.6
(3)
A 		6.8
(-1.9)
A 		6.3
(-2)
A 		21
avr 3
(-3) 		15.7
(3) 		10
(0.3) 		3.4
(-2.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 686
1 2 3 4 5 6 range
A 1.3
(-3)
A 		4.2
(-3)
A 		4.1
(-3)
A 		220.7
(-0.6)
P 		540.9
(3)
P 		94.1
(-2)
P 		540
B 4.3
(-3)
A 		7.9
(-3)
A 		15
(-2.9)
A 		190.7
(-1.4)
P 		687.5
(3)
P 		132.1
(-1.9)
P 		683
C 8.4
(-2.9)
A 		4.6
(-3)
A 		2.5
(-3)
A 		111.3
(-2)
P 		649.4
(3)
P 		96.8
(-2.1)
P 		647
avr 4.7
(-3) 		5.6
(-3) 		7.2
(-3) 		174.2
(-1.4) 		625.9
(3) 		107.7
(-2) 		621
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2711
Sequence Type Exemplar sequence
Representative Public ID E01G4.6 NCBI
Target Description E01G4.6 /REP_DB=WormBase Gene ID /WP=CE15755 /TR=O02239 /GB=CAB04387.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064435 NCBI Caenorhabditis elegans E01G4.6 (E01G4.6) mRNA, complete cds. 11/11 None
E01G4.6 ENSEMBL cdna:known chromosome:CEL140:II:13482301:13485667:1 gene:E01G4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000148 6/11 Cross Hyb Matching Probes None
GENEFINDER00000000158 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13482298-13485560(+) 96.5 100.0
Public Domain and Genome References
Gene Title
Ensembl E01G4.6
Entrez Gene 174990 Entrez gene
SwissProt O02239 EMBL-EBI
WormBase CE15755 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04387 Hypothetical protein E01G4.6 [Caenorhabditis elegans] emb|CAB05719.1| Hypothetical protein E01G4.6 [Caenorhabditis elegans] ref|NP_496836.1| E01G4.6 [Caenorhabditis elegans] 0.0
blast CAE73344 Hypothetical protein CBG20775 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177729_AT
aaactcactgccaacaatacgcgtcgtgctggcaaactgtgttggactacgagcagcaat
gcgacaggaagtactcgaccgaggtgttgagccacggaatcgacgacagcgagatcttga
acatcctccacaatagctcgatttcccatcatgagattgttctgaaggcttgcctgcgtc
cattggatagatcagttcattccacactcaaacaactgctcgtaatccaacgcggagtcc
gcaaagcctgcctcgagctcggacgcaacaagatcgccgtcaccgactccgaagaagccc
tctgcaataccgagatccctagcactgccgccatcgacgagttcatctcctccgagcacg
tccgttcccagtccaaccatctgacgtgtcgcgccaagttggagccaatccgcgagactt
gctcaatcgttagaaactgttgcgcttccgtcgacacttgcgacaactacatcagctcat
cgccggtgaagaagctggagaccgaggcgattcgtcgtctcgtgaagaagcaaaacgact
gtgagacgaagatgttgcagacgttgagctacatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCACTGCCAACAATACGCGTC 22 129 2042 Antisense
TACGCGTCGTGCTGGCAAACTGTGT 577 647 2059 Antisense
GTTGAGCCACGGAATCGACGACAGC 182 439 2127 Antisense
CAGCGAGATCTTGAACATCCTCCAC 16 203 2148 Antisense
ACAATAGCTCGATTTCCCATCATGA 244 115 2171 Antisense
ACAACTGCTCGTAATCCAACGCGGA 420 113 2253 Antisense
AATCCGCGAGACTTGCTCAATCGTT 175 169 2448 Antisense
CGTTAGAAACTGTTGCGCTTCCGTC 185 247 2469 Antisense
ACTTGCGACAACTACATCAGCTCAT 63 105 2497 Antisense
GAGACCGAGGCGATTCGTCGTCTCG 100 393 2539 Antisense
GTTGCAGACGTTGAGCTACATCCAT 482 439 2595 Antisense
Sequence Source Affymetrix Proprietary Database