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[177728_at]

Description C26C6.4 /REP_DB=WormBase Gene ID /WP=CE05313 /TR=Q18207 /GB=CAA96597.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 2.4
(-2.8)
A 		1.3
(-3)
A 		3.5
(-2.5)
A 		29.2
(3)
A 		28
B 22.6
(3)
A 		12.2
(-0.6)
A 		5.2
(-3)
A 		19.3
(1.9)
A 		17
C 4.7
(-3)
A 		8.4
(-2.7)
A 		7.3
(-2.8)
A 		81.2
(3)
A 		77
avr 9.9
(-2.3) 		7.3
(-2.7) 		5.3
(-3) 		43.2
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 4.8
(-2.8)
A 		28.7
(-0.5)
A 		27
(-0.7)
A 		32.4
(-0.2)
A 		66.7
(3)
A 		2.3
(-3)
A 		64
B 2.5
(-3)
A 		14.9
(-0.5)
A 		2.9
(-2.9)
A 		18.2
(0.1)
A 		32.5
(3)
A 		15.3
(-0.4)
A 		30
C 1.2
(-3)
A 		17.8
(-1.9)
A 		3
(-2.9)
A 		93.4
(3)
A 		38
(-0.6)
A 		13.8
(-2.2)
A 		92
avr 2.8
(-3) 		20.5
(-0.7) 		11
(-1.9) 		48
(3) 		45.7
(2.7) 		10.5
(-2) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.9
(-2.1)
A 		0.3
(-3)
A 		0.9
(-2.1)
A 		4.3
(3)
A 		4
B 7.2
(3)
A 		3
(-1.2)
A 		1.2
(-3)
A 		4.1
(-0.1)
A 		6
C 1.6
(-3)
A 		2.4
(-2.6)
A 		2.5
(-2.6)
A 		13.7
(3)
A 		12
avr 3.2
(-1.3) 		1.9
(-2.6) 		1.5
(-3) 		7.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		10.2
(-0)
A 		5.9
(-1.4)
A 		8.2
(-0.7)
A 		20.1
(3)
A 		0.6
(-3)
A 		20
B 0.9
(-2.9)
A 		5
(-0.9)
A 		0.7
(-3)
A 		4.8
(-1)
A 		13.2
(3)
A 		5.7
(-0.6)
A 		13
C 0.4
(-3)
A 		5.4
(-1.4)
A 		0.8
(-2.9)
A 		18.8
(3)
A 		12.3
(0.9)
A 		4.6
(-1.6)
A 		18
avr 0.7
(-3) 		6.9
(-0.4) 		2.5
(-2.3) 		10.6
(1.1) 		15.2
(3) 		3.6
(-1.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177728_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1457
Sequence Type Exemplar sequence
Representative Public ID C26C6.4 NCBI
Target Description C26C6.4 /REP_DB=WormBase Gene ID /WP=CE05313 /TR=Q18207 /GB=CAA96597.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059709 NCBI Caenorhabditis elegans C26C6.4 (C26C6.4) mRNA, complete cds. 11/11 None
SNAP00000003874 ENSEMBL cdna:SNAP chromosome:CEL140:I:7540443:7543460:1 9/11 None
GENEFINDER00000003883 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7540443:7544125:1 11/11 None
C26C6.4 ENSEMBL cdna:known chromosome:CEL140:I:7540443:7544125:1 gene:C26C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7540373-7544056(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26C6.4
Entrez Gene 182933 Entrez gene
SwissProt Q18207 EMBL-EBI
WormBase CE05313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96597 Hypothetical protein C26C6.4 [Caenorhabditis elegans] ref|NP_492110.1| C26C6.4 [Caenorhabditis elegans] 0.0
blast CAE66570 Hypothetical protein CBG11885 [Caenorhabditis briggsae] 1.0E-169
blast CAE66570 Hypothetical protein CBG11885 [Caenorhabditis briggsae] 1.0E-166
blast CAA96597 Hypothetical protein C26C6.4 [Caenorhabditis elegans] ref|NP_492110.1| C26C6.4 [Caenorhabditis elegans] 1.0E-160
blast CAE66570 Hypothetical protein CBG11885 [Caenorhabditis briggsae] 1.0E-141
blast CAB07607 Hypothetical protein F28G4.4 [Caenorhabditis elegans] ref|NP_507111.2| F28G4.4 [Caenorhabditis elegans] 1.0E-112
blast CAB07607 Hypothetical protein F28G4.4 [Caenorhabditis elegans] ref|NP_507111.2| F28G4.4 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492110.1 1 20-42
C26C6.4 1 20-42
SNAP00000003874 1 20-42
GENEFINDER00000003883 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:177728_AT
tgggcaatgcaacaggatacactttgggttgaaaattttgattcaatggatcttgaaaat
agatatccagatgaatatatgctttttgacactgttggaaatgagcagtttggtgaatac
gatcgaatgttcggatggatatgtggatcaacattttttgttcgtggaaatccaacaacg
tatcagtttttttatcagattgattcatttatgagatcacatcaaagtccggattcttca
attatgacctacttgtgtggtcataggaattacagatgtcatcgacttccgagatggatc
atctcatcatcagactattttcgtggtactcgtgaaacaacgccagttatgattcaagtg
gattctgatcaaacagatgaaacaaaaatggaatcatttcaaagagcaaacttcattttt
cgacatgataatggaacatgtgatcgaaaatctgttcataaattgagagacgccgtacga
ttagcgtttcccgaaaaattgaaacttttggatcaaagtccatatggagagagtatgttc
actcaattacactatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCAATGCAACAGGATACACTTT 194 555 658 Antisense
ATATATGCTTTTTGACACTGTTGGA 159 19 732 Antisense
GAAATCCAACAACGTATCAGTTTTT 61 363 824 Antisense
GATCACATCAAAGTCCGGATTCTTC 92 421 872 Antisense
ATTCTTCAATTATGACCTACTTGTG 319 11 890 Antisense
TACAGATGTCATCGACTTCCGAGAT 639 643 928 Antisense
ATGGATCATCTCATCATCAGACTAT 643 51 951 Antisense
ATCAGACTATTTTCGTGGTACTCGT 325 29 966 Antisense
GGTACTCGTGAAACAACGCCAGTTA 579 503 982 Antisense
GAGACGCCGTACGATTAGCGTTTCC 609 393 1124 Antisense
GTATGTTCACTCAATTACACTATAT 16 457 1190 Antisense
Sequence Source Affymetrix Proprietary Database