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[177727_at] G-protein coupled receptor, srh family

Description R08H2.5 /REP_DB=WormBase Gene ID /WP=CE12602 /TR=O17988 /GB=CAB04631.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 06      6grp_cgc > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 38.2
(0.4)
A 		5.4
(-3)
A 		8.5
(-2.7)
A 		63.6
(3)
A 		58
B 44.2
(1.4)
A 		14.5
(-3)
A 		55.2
(3)
A 		38.5
(0.5)
A 		41
C 38.5
(2.3)
A 		30.9
(0.3)
A 		18.1
(-3)
A 		41.3
(3)
A 		23
avr 40.3
(1.5) 		16.9
(-3) 		27.3
(-1) 		47.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 8.3
(-2.5)
A 		18.2
(-0.8)
A 		40
(3)
A 		26
(0.6)
A 		8
(-2.6)
A 		5.5
(-3)
A 		35
B 28.4
(-0)
A 		31.7
(0.6)
A 		13.5
(-2.8)
A 		44.7
(3)
A 		12.4
(-3)
A 		22.2
(-1.2)
A 		32
C 36.4
(3)
A 		31.8
(1.7)
A 		14.7
(-3)
A 		14.7
(-3)
A 		19.2
(-1.8)
A 		25
(-0.2)
A 		22
avr 24.4
(1.4) 		27.2
(2.5) 		22.7
(0.7) 		28.5
(3) 		13.2
(-3) 		17.6
(-1.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.9
(3)
A 		1.2
(-3)
A 		2.2
(-2.5)
A 		9.3
(0.8)
A 		13
B 14.1
(3)
A 		3.6
(-3)
A 		12.8
(2.3)
A 		8.2
(-0.4)
A 		11
C 12.7
(3)
A 		8.9
(-0.6)
A 		6.3
(-3)
A 		7
(-2.3)
A 		6
avr 13.6
(3) 		4.6
(-3) 		7.1
(-1.3) 		8.2
(-0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.5
(-2.8)
A 		6.5
(1.2)
A 		8.7
(3)
A 		6.6
(1.3)
A 		2.4
(-2.1)
A 		1.3
(-3)
A 		7
B 9.9
(1.7)
A 		10.6
(2.2)
A 		3.3
(-3)
A 		11.8
(3)
A 		5
(-1.8)
A 		8.3
(0.5)
A 		9
C 13.5
(3)
A 		9.7
(0.8)
A 		3.7
(-2.6)
A 		3
(-3)
A 		6.2
(-1.2)
A 		8.4
(0.1)
A 		11
avr 8.3
(2.2) 		8.9
(3) 		5.2
(-2) 		7.1
(0.5) 		4.5
(-3) 		6
(-1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177727_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13501
Sequence Type Exemplar sequence
Representative Public ID R08H2.5 NCBI
Target Description R08H2.5 /REP_DB=WormBase Gene ID /WP=CE12602 /TR=O17988 /GB=CAB04631.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074417 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-122) (srh-122) mRNA, complete cds. 11/11 A 
R08H2.5 ENSEMBL cdna:known chromosome:CEL140:V:15379087:15380589:-1 gene:R08H2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15380193-15380589(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-122
Ensembl R08H2.5
Entrez Gene 187712 Entrez gene
SwissProt O17988 EMBL-EBI
WormBase CE33157 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04631 Hypothetical protein R08H2.5 [Caenorhabditis elegans] ref|NP_506818.2| Serpentine Receptor, class H family member (srh-122) [Caenorhabditis elegans] 0.0
blast CAA16499 Hypothetical protein F08E10.3 [Caenorhabditis elegans] ref|NP_507424.1| Serpentine Receptor, class H family member (srh-123) [Caenorhabditis elegans] 1.0E-125
blast T24052 hypothetical protein R08H2.6 - Caenorhabditis elegans 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506818.2 7 29-51,71-93,108-130,151-168,217-239,259-281,291-313
R08H2.5 7 29-51,71-93,108-130,151-168,217-239,259-281,291-313
Sequence
Target Sequence 
>C. ELEGANS:177727_AT
tcattttttgacacttggcggagcataatttctttttcaaaaatcattcagctagtatca
ctaccatttcaagttcttgcattctacgttattctgtacaagaccccagttgctatgaaa
atttccaaaataccattactaatcaatcactttttctgtgctcaactcgatgtcgttcta
tgtaccctctgcccattatacatatttttgccaatgtccgcagtctcctgtgttggattg
ctcagctggttgggagtccccacattattgcaattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTTTTGACACTTGGCGGAGCA 422 613 73 Antisense
TGGCGGAGCATAATTTCTTTTTCAA 148 545 88 Antisense
AAATCATTCAGCTAGTATCACTACC 675 115 113 Antisense
ATCACTACCATTTCAAGTTCTTGCA 685 27 129 Antisense
GTTCTTGCATTCTACGTTATTCTGT 598 443 145 Antisense
GTTATTCTGTACAAGACCCCAGTTG 607 447 160 Antisense
ACTTTTTCTGTGCTCAACTCGATGT 221 103 221 Antisense
AACTCGATGTCGTTCTATGTACCCT 618 141 236 Antisense
TATTTTTGCCAATGTCCGCAGTCTC 33 663 275 Antisense
CGCAGTCTCCTGTGTTGGATTGCTC 700 253 291 Antisense
GGAGTCCCCACATTATTGCAATTAT 50 515 325 Antisense
Sequence Source Affymetrix Proprietary Database