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[177725_at]

Description C44H4.7 /REP_DB=WormBase Gene ID /WP=CE20563 /TR=Q93378 /GB=CAB01869.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 26      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 696.4
(3)
P 		552.4
(-0.8)
P 		469.6
(-3)
P 		684.3
(2.7)
P 		227
B 743.5
(3)
P 		403.6
(-3)
P 		435.2
(-2.4)
P 		616
(0.7)
P 		340
C 723.6
(3)
P 		454.6
(-3)
P 		489.2
(-2.2)
P 		600.3
(0.2)
P 		269
avr 721.2
(3) 		470.2
(-2.9) 		464.7
(-3) 		633.5
(0.9) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 978.7
(3)
P 		675.4
(-0.2)
P 		450
(-2.6)
P 		430.5
(-2.8)
P 		408.8
(-3)
P 		506.7
(-2)
P 		570
B 858.6
(3)
P 		691.7
(0.6)
P 		440.6
(-3)
P 		520
(-1.9)
P 		469.4
(-2.6)
P 		535.1
(-1.6)
P 		418
C 484.2
(-0.9)
P 		723
(3)
P 		492.4
(-0.8)
P 		478
(-1)
P 		354.7
(-3)
P 		421.7
(-1.9)
P 		368
avr 773.8
(3) 		696.7
(1.7) 		461
(-2.2) 		476.2
(-1.9) 		411
(-3) 		487.8
(-1.7) 		363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 253.5
(3)
P 		119.9
(-2.2)
P 		122.8
(-2.1)
P 		100.2
(-3)
P 		153
B 237.1
(3)
P 		99.7
(-3)
P 		100.9
(-2.9)
P 		131.3
(-1.6)
P 		137
C 239.5
(3)
P 		130.7
(-1.7)
P 		170.5
(0)
P 		101.2
(-3)
P 		138
avr 243.4
(3) 		116.8
(-2.7) 		131.4
(-2.1) 		110.9
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 180.4
(0.5)
P 		240.2
(3)
P 		98
(-3)
P 		109.2
(-2.5)
P 		123.3
(-1.9)
P 		123.4
(-1.9)
P 		142
B 298.7
(3)
P 		230.2
(0.9)
P 		107
(-3)
P 		137.7
(-2)
P 		190.7
(-0.4)
P 		199.6
(-0.1)
P 		192
C 179.5
(1)
P 		220.6
(3)
P 		125.3
(-1.6)
P 		96.1
(-3)
P 		114.8
(-2.1)
P 		141.2
(-0.8)
P 		125
avr 219.5
(2.5) 		230.3
(3) 		110.1
(-3) 		114.3
(-2.8) 		142.9
(-1.4) 		154.7
(-0.8) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17834
Sequence Type Exemplar sequence
Representative Public ID C44H4.7 NCBI
Target Description C44H4.7 /REP_DB=WormBase Gene ID /WP=CE20563 /TR=Q93378 /GB=CAB01869.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029299(10), NM_001029300(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029299 NCBI Caenorhabditis elegans Egl-1 suppressor/DiO uptake defective/raf enhancer family member (eor-2) (eor-2) mRNA, complete cds. 10/11 None
NM_001029300 NCBI Caenorhabditis elegans Egl-1 suppressor/DiO uptake defective/raf enhancer family member (eor-2) (eor-2) mRNA, complete cds. 10/11 None
SNAP00000032263 ENSEMBL cdna:SNAP chromosome:CEL140:X:14606651:14608547:1 10/11 None
GENEFINDER00000032272 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14606651:14608547:1 10/11 None
C44H4.7b ENSEMBL cdna:known chromosome:CEL140:X:14602987:14608550:1 gene:C44H4.7 10/11 None
C44H4.7a ENSEMBL cdna:known chromosome:CEL140:X:14602998:14608570:1 gene:C44H4.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14603013-14608547(+) 97.32 100.0
Public Domain and Genome References
Ensembl C44H4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD42645 Hypothetical protein C44H4.7a [Caenorhabditis elegans] emb|CAD42646.2| Hypothetical protein C44H4.7a [Caenorhabditis elegans] gb|AAM74152.1| EOR-2 [Caenorhabditis elegans] ref|NP_001024470.1| Egl-1 suppressor/DiO uptake defective/raf enhancer family member (eor-2) [Caenorhabditis elegans] gb|AAM74223.1| EOR-2A [Caenorhabditis elegans] 0.0
blast CAB01919 Hypothetical protein C44H4.7b [Caenorhabditis elegans] emb|CAB01869.3| Hypothetical protein C44H4.7b [Caenorhabditis elegans] ref|NP_001024471.1| Egl-1 suppressor/DiO uptake defective/raf enhancer family member (eor-2) [Caenorhabditis elegans] gb|AAM74224.1| EOR-2B [Caenorhabditis elegans] 0.0
blast CAE63206 Hypothetical protein CBG07561 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177725_AT
ggcgtcctctgtggaatggttcaagaatcctgggactgtgttttttgaagaagagacgaa
ggttgagccaatagacgatgattcaattttaacggagccaagacgagtctccctaaacac
tcttgtcaacgcgtacctaacacaggtgtttacaaaaacccacgtggaaagcctcataga
tgataaagagcggcggctcactgatgcacatagtatttgcaaacggaaaaagccgcggag
agtgattcactttttcgacaaaacatcttgcaatgaaaaactgcttgtggagaatctatc
aagcgatatccatgatgaaaatgaagacgatgaagaatatccaattgtatctgatgcgat
atcgtgtggtcggtgttcaatggcagttgactttcttcaccgcatgcatcatattaaatt
ccatatgcttaggatatgtgaggataagctagaagaaattggtacatctgatatcgactt
gacatccgataagattgtggagaaagcgaaagccgacaaagtctggacgcttggtgtcat
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTCCTCTGTGGAATGGTTCAAG 203 541 2256 Antisense
GAATCCTGGGACTGTGTTTTTTGAA 358 325 2280 Antisense
AAGACGAGTCTCCCTAAACACTCTT 410 153 2355 Antisense
TAAACACTCTTGTCAACGCGTACCT 108 641 2369 Antisense
AAACCCACGTGGAAAGCCTCATAGA 379 125 2411 Antisense
GCGGCTCACTGATGCACATAGTATT 261 293 2448 Antisense
ATCGTGTGGTCGGTGTTCAATGGCA 595 33 2616 Antisense
CAATGGCAGTTGACTTTCTTCACCG 455 183 2633 Antisense
TTTCTTCACCGCATGCATCATATTA 138 673 2647 Antisense
GGTACATCTGATATCGACTTGACAT 270 505 2716 Antisense
AAGTCTGGACGCTTGGTGTCATTCA 136 155 2774 Antisense
Sequence Source Affymetrix Proprietary Database