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[177724_at]

Description W04G3.1 /REP_DB=WormBase Gene ID /WP=CE03785 /TR=Q23162 /GB=CAA92023.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      6grp_highest_nonorm > 12      6grp_total > 09      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3469
1 2 3 4 range
A 71.2
(-3)
A 		3528
(3)
P 		3441.3
(2.8)
P 		148.3
(-2.9)
A 		3457
B 59.3
(-3)
A 		2949.6
(3)
P 		2711.6
(2.5)
P 		68.3
(-3)
A 		2890
C 60.9
(-3)
A 		3147.7
(3)
P 		2946.4
(2.6)
P 		67.2
(-3)
P 		3087
avr 63.8
(-3) 		3208.4
(3) 		3033.1
(2.7) 		94.6
(-2.9) 		3145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2984
1 2 3 4 5 6 range
A 3462.8
(3)
P 		1749.8
(-0.5)
P 		1544.9
(-0.9)
P 		3138.5
(2.3)
P 		1640.5
(-0.7)
P 		503.8
(-3)
P 		2959
B 2667.9
(3)
P 		1648.8
(0.2)
P 		1544.5
(-0.1)
P 		2683.4
(3)
P 		1514.8
(-0.2)
P 		492.1
(-3)
P 		2191
C 2930.4
(3)
P 		1572.6
(-0.3)
P 		2158.5
(1.1)
P 		2682.9
(2.4)
P 		1694.6
(-0)
P 		478.6
(-3)
P 		2452
avr 3020.4
(3) 		1657.1
(-0.2) 		1749.3
(-0) 		2834.9
(2.6) 		1616.6
(-0.3) 		491.5
(-3) 		2529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1016
1 2 3 4 range
A 25.9
(-3)
A 		765.8
(2.1)
P 		899.6
(3)
P 		21.7
(-3)
A 		878
B 18.9
(-3)
A 		728.5
(3)
P 		628.3
(2.2)
P 		14.5
(-3)
A 		714
C 20.2
(-2.9)
A 		905
(2.3)
P 		1026.9
(3)
P 		11.3
(-3)
P 		1016
avr 21.7
(-3) 		799.8
(2.6) 		851.6
(3) 		15.8
(-3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 964
1 2 3 4 5 6 range
A 638.3
(1.6)
P 		622.3
(1.5)
P 		336.4
(-1.1)
P 		796
(3)
P 		495
(0.3)
P 		122.7
(-3)
P 		673
B 928.3
(3)
P 		548.8
(-0.1)
P 		375
(-1.5)
P 		710.7
(1.2)
P 		615.4
(0.5)
P 		183.5
(-3)
P 		745
C 1086.2
(3)
P 		479.8
(-0.9)
P 		549.4
(-0.5)
P 		539.5
(-0.5)
P 		548.4
(-0.5)
P 		160.2
(-3)
P 		926
avr 884.3
(3) 		550.3
(0.3) 		420.3
(-0.8) 		682.1
(1.3) 		552.9
(0.3) 		155.5
(-3) 		729
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16305
Sequence Type Exemplar sequence
Representative Public ID W04G3.1 NCBI
Target Description W04G3.1 /REP_DB=WormBase Gene ID /WP=CE03785 /TR=Q23162 /GB=CAA92023.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077449 NCBI Caenorhabditis elegans W04G3.1 (W04G3.1) mRNA, complete cds. 11/11 None
SNAP00000042820 ENSEMBL cdna:SNAP chromosome:CEL140:X:11059916:11061552:1 11/11 None
GENEFINDER00000042838 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11059934:11061552:1 11/11 None
W04G3.1 ENSEMBL cdna:known chromosome:CEL140:X:11059916:11061776:1 gene:W04G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11059915-11061552(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G3.1
Entrez Gene 181296 Entrez gene
SwissProt Q23162 EMBL-EBI
WormBase CE03785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92023 Hypothetical protein W04G3.1 [Caenorhabditis elegans] ref|NP_509850.1| W04G3.1 [Caenorhabditis elegans] 0.0
blast CAA92023 Hypothetical protein W04G3.1 [Caenorhabditis elegans] ref|NP_509850.1| W04G3.1 [Caenorhabditis elegans] 1.0E-180
blast CAE70759 Hypothetical protein CBG17508 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509850.1 1 27-49
W04G3.1 1 27-49
SNAP00000042820 1 27-49
GENEFINDER00000042838 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:177724_AT
tatttctctcctaatccgataatgggtgaagaaggattctcgatgcaagaagcttacaga
gtggtttcaaaaactggaccaattgagacttacaaaagagacatgaacaaagttggacca
ggacaatactggatgtacactgaagagtacttctacccaagacaattttacattatcgga
gctggaccatctttcaataatggcaccagaaattctaccgagccactccaatacttgatt
gcttctgatgctaaccgactttccctcatggtttatgctagagatcctcttgtatttttc
cagaagtacaacaaggaggttgttgagttcatgaatggacacggatttggaggaaatgtc
ttctggaacagcccaaagccaatttaccaaggaccagactgcgaatggccttctgaaaag
gaggtctttgccagaagagttttgaaaaaccaagaaatgaacgagcgcaacaagaatgga
acttcagacccaattctttccggaatgccacttgccgacatgatccgcgacccaaagcgt
actttggaaagactagttggaacaaaagctttgcaacaagccaccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTCTCTCCTAATCCGATAATGG 688 661 394 Antisense
TATCGGAGCTGGACCATCTTTCAAT 284 659 567 Antisense
TACCGAGCCACTCCAATACTTGATT 646 647 609 Antisense
TGATTGCTTCTGATGCTAACCGACT 102 565 629 Antisense
TAACCGACTTTCCCTCATGGTTTAT 588 635 645 Antisense
TAGAGATCCTCTTGTATTTTTCCAG 490 653 672 Antisense
GAGGAAATGTCTTCTGGAACAGCCC 118 403 743 Antisense
GGAACAGCCCAAAGCCAATTTACCA 368 529 758 Antisense
GGAACTTCAGACCCAATTCTTTCCG 631 529 871 Antisense
TTTCCGGAATGCCACTTGCCGACAT 585 669 890 Antisense
AAAAGCTTTGCAACAAGCCACCGCC 545 131 957 Antisense
Sequence Source Affymetrix Proprietary Database