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[177722_at]

Description F21D9.6 /REP_DB=WormBase Gene ID /WP=CE18632 /TR=Q9XV74 /GB=CAB04159.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 08      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.7
(-3)
A 		5.7
(-3)
A 		9
(3)
A 		9
(3)
A 		3
B 4.1
(-1.2)
A 		2.8
(-3)
A 		7.2
(3)
A 		5.6
(0.8)
A 		4
C 5.7
(-0.5)
A 		6.9
(0.3)
A 		1.8
(-3)
A 		11.1
(3)
A 		9
avr 5.2
(-2.8) 		5.1
(-3) 		6
(-1.5) 		8.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 51.2
(3)
A 		4.5
(-2.7)
A 		2.2
(-3)
A 		3.6
(-2.8)
A 		6.2
(-2.5)
A 		7.1
(-2.4)
A 		49
B 6.4
(-3)
A 		8.8
(-1.3)
A 		7.7
(-2.1)
A 		14.5
(2.7)
A 		13.9
(2.3)
A 		14.9
(3)
A 		9
C 31.3
(3)
A 		4.9
(-2.6)
A 		7
(-2.2)
A 		3
(-3)
A 		13.8
(-0.7)
A 		8.5
(-1.8)
A 		28
avr 29.6
(3) 		6.1
(-2.9) 		5.6
(-3) 		7
(-2.7) 		11.3
(-1.6) 		10.2
(-1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.1
(1.5)
A 		1.2
(-3)
A 		2.4
(3)
A 		1.3
(-2.5)
A 		1
B 1.3
(0.6)
A 		0.7
(-3)
A 		1.7
(3)
A 		1.2
(0)
A 		1
C 1.9
(2.6)
A 		2
(3)
A 		0.6
(-3)
A 		1.9
(2.6)
A 		1
avr 1.8
(3) 		1.3
(-3) 		1.6
(0.6) 		1.5
(-0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.4
(3)
A 		1.6
(-2.3)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		1.9
(-2.1)
A 		1.7
(-2.2)
A 		9
B 2.2
(-2.5)
A 		2.9
(-1.4)
A 		1.9
(-3)
A 		3.8
(0.1)
A 		5.6
(3)
A 		5.6
(3)
A 		4
C 11.6
(3)
A 		1.5
(-2.5)
A 		1.8
(-2.3)
A 		0.6
(-3)
A 		4.5
(-0.9)
A 		2.9
(-1.7)
A 		11
avr 7.7
(3) 		2
(-2.4) 		1.4
(-3) 		1.8
(-2.6) 		4
(-0.5) 		3.4
(-1.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13638
Sequence Type Exemplar sequence
Representative Public ID F21D9.6 NCBI
Target Description F21D9.6 /REP_DB=WormBase Gene ID /WP=CE18632 /TR=Q9XV74 /GB=CAB04159.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000022436 ENSEMBL cdna:SNAP chromosome:CEL140:V:19245451:19247559:1 11/11 None
GENEFINDER00000022446 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19245451:19247559:1 11/11 None
F21D9.6 ENSEMBL cdna:known chromosome:CEL140:V:19245451:19247559:1 gene:F21D9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19245450-19247559(+) 100.0 100.0
Public Domain and Genome References
Ensembl F21D9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21203 hypothetical protein F21D9.6 - Caenorhabditis elegans 1.0E-174
blast CAB04466 Hypothetical protein F55C9.1 [Caenorhabditis elegans] ref|NP_507750.1| F55C9.1 [Caenorhabditis elegans] 1.0E-31
blast CAB04844 Hypothetical protein T26H2.2 [Caenorhabditis elegans] ref|NP_507741.1| T26H2.2 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-5
Sequence
Target Sequence 
>C. ELEGANS:177722_AT
cgcacgtggcaatttccaggggcccacgcctctcctcaatattaggacgttgaacttcac
tccaagagattacctacttcatctaatggatttgttcaagcaatcagaaattgatgttcg
tgaggagatcaaagacactttttcgagaaaaatgagcttcgacactcgcattacgttctg
ctatcactattgccacatgatgctttccggaaacgtttttcaacatgatatcgaatgccc
aatgttcagaattaatgagctattgcaactgaacagtgaatttattgaacttaatcagac
aatctttggcagcggcaatctaaatttattcttgaaacattggcttctcggtttaacaca
tcaaaatttaaagtttatggttacaacaatggaaacaaaagaccttgaagctttgtggaa
aggaatcgactatcagcagcagccagagtccaaaacaagaaccgtcaggatcaagcccca
cgtcaagcatcctccccgacggtataaaacgtcagaaacgttcaaagggggctacgatat
tctgagaatcgatgggacactggcaacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCACGTGGCAATTTCCAGGGGCCC 623 251 288 Antisense
CCACGCCTCTCCTCAATATTAGGAC 59 275 311 Antisense
TCGACACTCGCATTACGTTCTGCTA 521 601 446 Antisense
CGTTCTGCTATCACTATTGCCACAT 600 247 461 Antisense
ATTGCCACATGATGCTTTCCGGAAA 145 7 476 Antisense
GACAATCTTTGGCAGCGGCAATCTA 233 365 585 Antisense
CATTGGCTTCTCGGTTTAACACATC 64 217 625 Antisense
AATCGACTATCAGCAGCAGCCAGAG 405 147 711 Antisense
ACAAGAACCGTCAGGATCAAGCCCC 250 113 742 Antisense
GCATCCTCCCCGACGGTATAAAACG 132 255 774 Antisense
GAATCGATGGGACACTGGCAACGGT 684 327 833 Antisense
Sequence Source Affymetrix Proprietary Database