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[177720_at]

Description T24D5.5 /REP_DB=WormBase Gene ID /WP=CE03725 /TR=Q22735 /GB=CAA92019.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 6.8
(-3)
A 		15.9
(-0.6)
A 		30
(3)
A 		21.2
(0.7)
A 		23
B 32.6
(3)
A 		9
(-2.1)
A 		5
(-3)
A 		30.1
(2.5)
A 		28
C 9.8
(-3)
A 		26.1
(-0.3)
A 		29.9
(0.3)
A 		46.4
(3)
A 		37
avr 16.4
(-3) 		17
(-2.8) 		21.6
(-1.1) 		32.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 7.9
(-2)
A 		17.9
(-0.2)
A 		35.4
(2.8)
A 		5.2
(-2.4)
A 		2
(-3)
A 		36.5
(3)
A 		35
B 23
(2.4)
A 		25.1
(3)
A 		17
(0.8)
A 		3.5
(-2.8)
A 		2.6
(-3)
A 		17.8
(1.1)
A 		23
C 5.7
(-2.2)
A 		12.7
(1.4)
A 		4.2
(-3)
A 		15.7
(2.9)
A 		15.1
(2.6)
A 		15.8
(3)
A 		12
avr 12.2
(-1) 		18.6
(1.3) 		18.9
(1.4) 		8.1
(-2.5) 		6.6
(-3) 		23.4
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.5
(-3)
A 		3.4
(-2)
A 		7.9
(3)
A 		3.1
(-2.3)
A 		5
B 10.4
(3)
A 		2.2
(-2.3)
A 		1.1
(-3)
A 		6.4
(0.4)
A 		9
C 3.3
(-3)
A 		7.5
(0.5)
A 		10.4
(3)
A 		7.8
(0.8)
A 		7
avr 5.4
(-0.1) 		4.4
(-3) 		6.5
(3) 		5.8
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.4
(-2.4)
A 		6.4
(1.2)
A 		7.7
(2.1)
A 		1.3
(-2.5)
A 		0.6
(-3)
A 		8.9
(3)
A 		8
B 8
(2.8)
A 		8.3
(3)
A 		4.1
(-0.4)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		6.6
(1.6)
A 		7
C 2.1
(-1.6)
A 		3.9
(1)
A 		1.1
(-3)
A 		3.2
(0)
A 		4.9
(2.4)
A 		5.3
(3)
A 		4
avr 3.8
(-0.6) 		6.2
(2.2) 		4.3
(-0.1) 		1.8
(-3) 		2.2
(-2.5) 		6.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17949
Sequence Type Exemplar sequence
Representative Public ID T24D5.5 NCBI
Target Description T24D5.5 /REP_DB=WormBase Gene ID /WP=CE03725 /TR=Q22735 /GB=CAA92019.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077705 NCBI Caenorhabditis elegans T24D5.5 (T24D5.5) mRNA, complete cds. 11/11 A 
T24D5.5 ENSEMBL cdna:known chromosome:CEL140:X:12597951:12600251:-1 gene:T24D5.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077706 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000013148 8/11 Cross Hyb Matching Probes None
SNAP00000013140 7/11 Cross Hyb Matching Probes None
SNAP00000001736 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001746 1/11 Cross Hyb Matching Probes None
R09A8.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12612647-12614979(+) 89.24 89.24
chrX:12597950-12600251(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24D5.5
Entrez Gene 188853 Entrez gene
SwissProt Q22735 EMBL-EBI
WormBase CE03725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92019 Hypothetical protein T24D5.5 [Caenorhabditis elegans] ref|NP_510106.1| T24D5.5 [Caenorhabditis elegans] 0.0
blast CAA92003 Hypothetical protein R09A8.1 [Caenorhabditis elegans] ref|NP_510107.1| R09A8.1 [Caenorhabditis elegans] 1.0E-86
blast CAA92004 Hypothetical protein R09A8.2 [Caenorhabditis elegans] ref|NP_510108.2| R09A8.2 [Caenorhabditis elegans] 7.0E-39
Sequence
Target Sequence 
>C. ELEGANS:177720_AT
gaacacactgcatgagctagaagtattgaagattctgatttttcaaaagttgatcggaaa
atggaaacgatatcaacggaaacacaaaatgggttccgaggaaactcggcacttcaaggg
ttcttcttctttgtcgaatatgaacgcacaaagctcattgatggtttgttggaaaagaag
cacagatgatcgtgtcaatgcacaacgttttgccacttcccatttggagcataactcgtg
tttggaatctcttccaccgcatgttttgtatccagacccacgtggatttgacaaggcggc
agcagtatgcagaaaaattcatttcagtactttttggcgcgttttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACACTGCATGAGCTAGAAGTA 126 353 861 Antisense
GAAACTCGGCACTTCAAGGGTTCTT 491 355 961 Antisense
GCACTTCAAGGGTTCTTCTTCTTTG 550 315 969 Antisense
CGAATATGAACGCACAAAGCTCATT 628 249 995 Antisense
AGCTCATTGATGGTTTGTTGGAAAA 704 77 1012 Antisense
TCGTGTTTGGAATCTCTTCCACCGC 57 599 1096 Antisense
TGTTTTGTATCCAGACCCACGTGGA 193 559 1122 Antisense
GACCCACGTGGATTTGACAAGGCGG 578 381 1135 Antisense
GACAAGGCGGCAGCAGTATGCAGAA 183 365 1150 Antisense
AATTCATTTCAGTACTTTTTGGCGC 271 177 1176 Antisense
TCAGTACTTTTTGGCGCGTTTTGAC 587 621 1184 Antisense
Sequence Source Affymetrix Proprietary Database