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[177719_at]

Description F37H8.4 /REP_DB=WormBase Gene ID /WP=CE28302 /TR=O17863 /GB=CAB04347.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 56.7
(-3)
A 		82.4
(-0.7)
A 		101
(1)
A 		123
(3)
A 		66
B 55.6
(-0.6)
A 		71.1
(3)
A 		45
(-3)
A 		56.8
(-0.3)
A 		26
C 51.2
(-3)
A 		67.2
(-1.7)
A 		61.1
(-2.2)
A 		122.9
(3)
A 		72
avr 54.5
(-3) 		73.6
(-0.5) 		69
(-1.1) 		100.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 82.1
(0.1)
A 		60.2
(-2.1)
A 		51.7
(-3)
A 		80.8
(-0)
A 		109.8
(2.9)
A 		110.6
(3)
A 		59
B 56.7
(-0.3)
A 		71.3
(0.6)
A 		108.6
(3)
A 		15.3
(-3)
A 		86.5
(1.6)
A 		71.8
(0.6)
A 		93
C 64.1
(-1.5)
A 		77.3
(-0.7)
A 		54.2
(-2)
A 		38.2
(-3)
A 		50
(-2.3)
A 		139
(3)
A 		101
avr 67.6
(-0.8) 		69.6
(-0.6) 		71.5
(-0.4) 		44.8
(-3) 		82.1
(0.6) 		107.1
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 20.7
(-1)
A 		17.9
(-3)
A 		26.4
(3)
A 		18
(-2.9)
A 		9
B 17.7
(3)
A 		17.6
(2.9)
A 		10.4
(-3)
A 		12.1
(-1.6)
A 		7
C 16.9
(-3)
A 		19.3
(0.3)
A 		21.3
(3)
A 		20.7
(2.2)
A 		4
avr 18.4
(0.6) 		18.3
(0.4) 		19.4
(3) 		16.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 15.1
(-2)
A 		21.4
(-0.2)
A 		11.3
(-3)
A 		20.5
(-0.5)
A 		33.1
(3)
A 		26.9
(1.3)
A 		22
B 19.7
(0)
A 		23.7
(0.8)
A 		26.4
(1.3)
A 		4.1
(-3)
A 		35.1
(3)
A 		26.8
(1.4)
A 		31
C 23.7
(-0.5)
A 		23.6
(-0.5)
A 		13.8
(-2.1)
A 		7.7
(-3)
A 		16.2
(-1.7)
A 		46.5
(3)
A 		39
avr 19.5
(-0.7) 		22.9
(0.2) 		17.2
(-1.3) 		10.8
(-3) 		28.1
(1.6) 		33.4
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3438
Sequence Type Exemplar sequence
Representative Public ID F37H8.4 NCBI
Target Description F37H8.4 /REP_DB=WormBase Gene ID /WP=CE28302 /TR=O17863 /GB=CAB04347.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063995 NCBI Caenorhabditis elegans F37H8.4 (F37H8.4) mRNA, complete cds. 11/11 None
SNAP00000006627 ENSEMBL cdna:SNAP chromosome:CEL140:II:11185965:11187939:1 11/11 None
GENEFINDER00000006633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11185965:11188094:1 11/11 None
F37H8.4 ENSEMBL cdna:known chromosome:CEL140:II:11185965:11187939:1 gene:F37H8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11185961-11187936(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37H8.4
Entrez Gene 174708 Entrez gene
SwissProt O17863 EMBL-EBI
WormBase CE35871 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04347 Hypothetical protein F37H8.4 [Caenorhabditis elegans] ref|NP_496396.2| F37H8.4 [Caenorhabditis elegans] 0.0
blast CAE57824 Hypothetical protein CBG00848 [Caenorhabditis briggsae] 1.0E-153
blast CAA88076 Hypothetical protein AH6.2 [Caenorhabditis elegans] ref|NP_496040.1| AH6.2 [Caenorhabditis elegans] sp|Q09201|YP22_CAEEL Hypothetical protein AH6.2 in chromosome II 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496396.2 4 104-126,150-172,232-251,271-293
F37H8.4 4 104-126,150-172,232-251,271-293
SNAP00000006627 4 104-126,150-172,232-251,271-293
GENEFINDER00000006633 4 104-126,150-172,232-251,271-293
Sequence
Target Sequence 
>C. ELEGANS:177719_AT
gcagttgtcaactacacgaaccgcagtggaaacagtaaaaccagcaacgaaaggctcatt
ctctcctactcgtgtgctactggaggagctatggctgctgctctgtcactgaatgcgatg
aacaagaacagtattgctgctcgcttggttccgtttgccgctgtagcattggctaacaca
atcaacattccgatgataaggagcaacgaagtaacagaaggattggagttacgtgatgag
aacggagagctcttggcaaggtcccgacaaatggctatactctccatagcacaagtcaca
ttgagtcggattgcaatggcaatgccagatatggtgatgacgccaatcataatgaaccga
atcacacgaacgatgtactaccgcacccgtccctggatgaaatactccgagtacccgatt
caaactatgctcgctgggatggctctcttcttcaccactccaatgtgttgtgcacttttc
ccgcagaagacggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTTGTCAACTACACGAACCGCA 87 313 406 Antisense
GCAACGAAAGGCTCATTCTCTCCTA 319 319 449 Antisense
TGCTGCTCTGTCACTGAATGCGATG 66 581 501 Antisense
AACAGTATTGCTGCTCGCTTGGTTC 363 137 532 Antisense
TTCCGTTTGCCGCTGTAGCATTGGC 383 681 554 Antisense
CGGAGAGCTCTTGGCAAGGTCCCGA 433 243 648 Antisense
AGGTCCCGACAAATGGCTATACTCT 633 53 664 Antisense
GCACCCGTCCCTGGATGAAATACTC 527 313 788 Antisense
ATACTCCGAGTACCCGATTCAAACT 509 23 807 Antisense
AAACTATGCTCGCTGGGATGGCTCT 527 127 827 Antisense
GTGCACTTTTCCCGCAGAAGACGGC 279 479 875 Antisense
Sequence Source Affymetrix Proprietary Database