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[177718_at]

Description F36G9.3 /REP_DB=WormBase Gene ID /WP=CE19833 /TR=Q9XV34 /GB=CAB04342.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 21.4
(-3)
A 		28.9
(-1.6)
A 		48.1
(1.9)
A 		53.9
(3)
A 		33
B 45.8
(-3)
A 		67.2
(0.9)
A 		78.9
(3)
A 		48.9
(-2.4)
A 		33
C 42.6
(-3)
A 		57.4
(-2.2)
A 		60.1
(-2)
A 		149
(3)
A 		106
avr 36.6
(-3) 		51.2
(-1.1) 		62.4
(0.3) 		83.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 6.4
(-2.4)
A 		5.6
(-2.6)
A 		45.6
(3)
A 		42.5
(2.6)
A 		29.1
(0.7)
A 		2.4
(-3)
A 		43
B 42.4
(1)
A 		61.8
(3)
A 		3.7
(-3)
A 		20.7
(-1.2)
A 		47.4
(1.5)
A 		9.6
(-2.4)
A 		58
C 18.2
(-0.4)
A 		38
(3)
A 		3.1
(-3)
A 		5.4
(-2.6)
A 		5.3
(-2.6)
A 		4.3
(-2.8)
A 		35
avr 22.3
(0.4) 		35.1
(3) 		17.5
(-0.6) 		22.9
(0.5) 		27.3
(1.4) 		5.4
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.8
(-1.6)
A 		6.3
(-3)
A 		12.6
(3)
A 		7.9
(-1.5)
A 		6
B 14.6
(0.2)
A 		16.6
(1.7)
A 		18.3
(3)
A 		10.4
(-3)
A 		8
C 14.1
(-3)
A 		16.5
(-1.7)
A 		20.9
(0.7)
A 		25.1
(3)
A 		11
avr 12.2
(-3) 		13.1
(-1.9) 		17.3
(3) 		14.5
(-0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.2
(-2.6)
A 		2
(-2.2)
A 		9.9
(2.5)
A 		10.8
(3)
A 		8.8
(1.8)
A 		0.6
(-3)
A 		10
B 14.8
(1.2)
A 		20.6
(3)
A 		0.9
(-3)
A 		5.5
(-1.6)
A 		19.3
(2.6)
A 		3.6
(-2.2)
A 		20
C 6.7
(0.3)
A 		11.6
(3)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		1.7
(-2.5)
A 		1.4
(-2.7)
A 		11
avr 7.6
(0.6) 		11.4
(3) 		3.9
(-1.7) 		5.8
(-0.5) 		9.9
(2.1) 		1.9
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13467
Sequence Type Exemplar sequence
Representative Public ID F36G9.3 NCBI
Target Description F36G9.3 /REP_DB=WormBase Gene ID /WP=CE19833 /TR=Q9XV34 /GB=CAB04342.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074598 NCBI Caenorhabditis elegans F36G9.3 (F36G9.3) mRNA, complete cds. 11/11 None
SNAP00000043422 ENSEMBL cdna:SNAP chromosome:CEL140:V:15960005:15961912:1 11/11 None
GENEFINDER00000043433 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15960260:15961905:1 10/11 None
F36G9.3 ENSEMBL cdna:known chromosome:CEL140:V:15960008:15961912:1 gene:F36G9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15960007-15961912(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G9.3
Entrez Gene 185367 Entrez gene
SwissProt Q9XV34 EMBL-EBI
WormBase CE19833 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04342 Hypothetical protein F36G9.3 [Caenorhabditis elegans] ref|NP_506999.1| F36G9.3 [Caenorhabditis elegans] 0.0
blast CAE60772 Hypothetical protein CBG04461 [Caenorhabditis briggsae] 0.0
blast CAE60772 Hypothetical protein CBG04461 [Caenorhabditis briggsae] 1.0E-177
blast CAE60772 Hypothetical protein CBG04461 [Caenorhabditis briggsae] 1.0E-159
blast CAE69879 Hypothetical protein CBG16219 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 3.2E-96
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 3.2E-96
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 3.1E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506999.1 10 47-69,93-115,136-158,173-192,222-244,259-281,293-315,325-347,368-390,394-413
F36G9.3 10 47-69,93-115,136-158,173-192,222-244,259-281,293-315,325-347,368-390,394-413
SNAP00000043422 10 48-70,94-116,137-159,174-193,214-236,256-278,290-312,322-344,365-387,391-410
GENEFINDER00000043433 8 21-43,67-89,110-132,147-166,196-218,233-255,267-289,299-318
Sequence
Target Sequence 
>C. ELEGANS:177718_AT
gaatcggacaggtttctgctggtataatatttggattccttggcgataaggttcggaagc
taggtcgtgactatctgattctgttcgcaacttttattcatctgttagcttatgtgataa
ttgggttgaacttcccggcaagtgcatcactgacaaaaaatgatgatagtggattgttct
ggacaccgaatctttatgtagctctggcaataggaatcgtgctgggatttgctgatgcct
gttggaatacgcagatcatgtctttcctgtgtgaaacttacccggaaaaaagtgctcaag
cttttgcgattttcaagttttttgagtctctcctatcctgcttcacattcattttctcat
cactgatatccctttactgggtgctcacaatcctttcaatattctcaattctggcactca
tatgttttttcattgtggaacgggaacgcgtcgatctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGGACAGGTTTCTGCTGGTAT 424 327 815 Antisense
GACTATCTGATTCTGTTCGCAACTT 48 373 883 Antisense
TTGAACTTCCCGGCAAGTGCATCAC 470 705 940 Antisense
CACCGAATCTTTATGTAGCTCTGGC 158 201 998 Antisense
CGTGCTGGGATTTGCTGATGCCTGT 570 245 1032 Antisense
ACGCAGATCATGTCTTTCCTGTGTG 55 93 1063 Antisense
AAGTTTTTTGAGTCTCTCCTATCCT 317 155 1129 Antisense
CTCATCACTGATATCCCTTTACTGG 509 227 1170 Antisense
TACTGGGTGCTCACAATCCTTTCAA 180 647 1189 Antisense
AATATTCTCAATTCTGGCACTCATA 690 173 1212 Antisense
TGGAACGGGAACGCGTCGATCTGGA 66 545 1250 Antisense
Sequence Source Affymetrix Proprietary Database