[Home] | [Total List]

[177717_s_at]

Description C06C3.4 /REP_DB=WormBase Gene ID /WP=CE00885 /TR=Q17717 /GB=CAA85317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 92.2
(-0.2)
M 		129.4
(1)
P 		193.1
(3)
P 		4.2
(-3)
A 		189
B 72.8
(1.7)
A 		86.3
(3)
A 		82.3
(2.6)
P 		25.1
(-3)
A 		61
C 68.9
(0.6)
A 		101.1
(3)
A 		66.2
(0.4)
M 		20.3
(-3)
A 		81
avr 78
(0.8) 		105.6
(2.5) 		113.9
(3) 		16.5
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 180.6
(3)
M 		80.2
(-3)
A 		140
(0.6)
P 		83.6
(-2.8)
P 		136.2
(0.3)
M 		116.7
(-0.8)
A 		100
B 49.9
(-2.8)
P 		154.8
(0.4)
A 		183.1
(1.2)
P 		105.8
(-1.1)
P 		241.5
(3)
A 		43.8
(-3)
A 		198
C 71
(-3)
P 		204.6
(3)
A 		94.5
(-1.9)
P 		155.9
(0.8)
P 		122.6
(-0.7)
A 		92.5
(-2)
P 		134
avr 100.5
(-1.8) 		146.5
(1.5) 		139.2
(1) 		115.1
(-0.8) 		166.8
(3) 		84.3
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 33.6
(1)
M 		28.1
(0.3)
P 		50.5
(3)
P 		0.6
(-3)
A 		50
B 23.2
(3)
A 		21.3
(2.4)
A 		19.1
(1.6)
P 		5.3
(-3)
A 		18
C 22.8
(1.5)
A 		29.1
(3)
A 		23.1
(1.6)
M 		3.4
(-3)
A 		26
avr 26.5
(2.1) 		26.2
(2) 		30.9
(3) 		3.1
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 33.3
(0.6)
M 		28.5
(-0.8)
A 		30.5
(-0.2)
P 		21.2
(-3)
P 		41.1
(3)
M 		28.4
(-0.8)
A 		20
B 17.4
(-2.9)
P 		51.5
(-0.4)
A 		44.5
(-0.9)
P 		28
(-2.1)
P 		98.1
(3)
A 		16.3
(-3)
A 		82
C 26.3
(-2.6)
P 		62.4
(3)
A 		24
(-3)
P 		31.3
(-1.9)
P 		39.7
(-0.5)
A 		31
(-1.9)
P 		38
avr 25.7
(-2.9) 		47.5
(0.9) 		33
(-1.6) 		26.8
(-2.7) 		59.6
(3) 		25.2
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177717_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2708
Sequence Type Exemplar sequence
Representative Public ID C06C3.4 NCBI
Target Description C06C3.4 /REP_DB=WormBase Gene ID /WP=CE00885 /TR=Q17717 /GB=CAA85317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063595(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063595 NCBI Caenorhabditis elegans C06C3.4 (C06C3.4) mRNA, complete cds. 9/11 A 
GENEFINDER00000008816 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9373509:9375760:1 9/11 None
GENEFINDER00000008818 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9376367:9379534:1 9/11 None
C06C3.4 ENSEMBL cdna:known chromosome:CEL140:II:9373509:9375760:1 gene:C06C3.4 9/11 A 
C06C3.9 ENSEMBL cdna:pseudogene chromosome:CEL140:II:9376133:9379140:1 gene:C06C3.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008807 5/11 Cross Hyb Matching Probes None
SNAP00000008809 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9373505-9375019(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06C3.4
C06C3.9
Entrez Gene 174485 Entrez gene
SwissProt Q17717 EMBL-EBI
WormBase CE32568 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85317 Hypothetical protein C06C3.4 [Caenorhabditis elegans] ref|NP_495996.2| C06C3.4 [Caenorhabditis elegans] 0.0
blast T19004 hypothetical protein C06C3.9 - Caenorhabditis elegans 1.0E-167
blast CAA85317 Hypothetical protein C06C3.4 [Caenorhabditis elegans] ref|NP_495996.2| C06C3.4 [Caenorhabditis elegans] 1.0E-114
blast CAE65947 Hypothetical protein CBG11124 [Caenorhabditis briggsae] 6.0E-97
blast CAE65947 Hypothetical protein CBG11124 [Caenorhabditis briggsae] 2.0E-89
blast T19004 hypothetical protein C06C3.9 - Caenorhabditis elegans 4.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-10
Sequence
Target Sequence 
>C. ELEGANS:177717_S_AT
acagcctcttgggtagtctaacagtagaatgtgagcaaattgctctcgctgagagcacaa
attgtgctccacaacagagtgttccaaagtgcacgggtttgttggaaggatgtactggta
acacatggctaggaggatttcacgtctatctgcttgaaaacactacacaagccgcagtgc
ttgacccagtttgttgctcatctccttcagtccaaattgatgcgggatcttgtataaatg
atcaattaaataccggaactcgcgacttttctcactccatcgtcgctgatttggtactaa
aattcaaattaaactttcacaatcctcaaaaatacaggtgtaccgaggatggcaatccga
atgtgaagagtgctcatgtgaatgtggaattgagcaatgctcaaatggggcaagtccagt
tcgagttattcataaaaaacttcttcttccatgtgcatcttgcaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCCTCTTGGGTAGTCTAACAGT 434 107 146 Antisense
GGGTTTGTTGGAAGGATGTACTGGT 674 495 240 Antisense
GTACTGGTAACACATGGCTAGGAGG 421 457 257 Antisense
AGGAGGATTTCACGTCTATCTGCTT 315 57 276 Antisense
GTCTATCTGCTTGAAAACACTACAC 513 467 289 Antisense
TACACAAGCCGCAGTGCTTGACCCA 374 643 309 Antisense
CTCATCTCCTTCAGTCCAAATTGAT 544 229 342 Antisense
GTCCAAATTGATGCGGGATCTTGTA 151 477 355 Antisense
CAAATTAAACTTTCACAATCCTCAA 450 193 450 Antisense
ACCGAGGATGGCAATCCGAATGTGA 250 87 487 Antisense
TTCTTCCATGTGCATCTTGCAATTT 86 691 589 Antisense
Sequence Source Affymetrix Proprietary Database