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[177716_at]

Description C06C3.4 /REP_DB=WormBase Gene ID /WP=CE00885 /TR=Q17717 /GB=CAA85317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      6grp_total > 09      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 27.5
(-3)
M 		110.9
(2.5)
P 		119.1
(3)
P 		53.9
(-1.3)
A 		92
B 53.2
(-1.9)
P 		172.3
(2.7)
P 		179.4
(3)
P 		25.5
(-3)
A 		154
C 39.4
(-2.4)
P 		183.3
(3)
P 		172.5
(2.6)
P 		24.6
(-3)
A 		159
avr 40
(-2.7) 		155.5
(2.9) 		157
(3) 		34.7
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 124.9
(2.7)
P 		88.5
(-0)
P 		128.2
(3)
P 		111
(1.7)
P 		59.9
(-2.2)
P 		49.6
(-3)
P 		79
B 169.4
(2.8)
P 		143.9
(1.7)
P 		38.5
(-2.8)
P 		174.5
(3)
P 		148
(1.9)
P 		34.7
(-3)
M 		140
C 256.8
(3)
P 		123.5
(-1.3)
P 		69.6
(-3)
P 		148.4
(-0.5)
P 		131.7
(-1)
P 		80.8
(-2.6)
P 		187
avr 183.7
(3) 		118.6
(-0) 		78.8
(-1.9) 		144.6
(1.2) 		113.2
(-0.3) 		55
(-3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 10
(-2.5)
M 		24.1
(1.2)
P 		31.1
(3)
P 		7.9
(-3)
A 		23
B 17
(-1.1)
P 		42.5
(3)
P 		41.6
(2.9)
P 		5.4
(-3)
A 		37
C 13
(-2)
P 		52.7
(2.2)
P 		60.1
(3)
P 		4.1
(-3)
A 		56
avr 13.3
(-1.8) 		39.8
(2.3) 		44.3
(3) 		5.8
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 23
(0.4)
P 		31.5
(3)
P 		27.9
(1.9)
P 		28.2
(2)
P 		18.1
(-1.1)
P 		12.1
(-3)
P 		19
B 58.9
(2.9)
P 		47.9
(1.6)
P 		9.3
(-3)
P 		46.2
(1.4)
P 		60.1
(3)
P 		12.9
(-2.6)
M 		51
C 95.2
(3)
P 		37.7
(-1.5)
P 		17.7
(-3)
P 		29.8
(-2.1)
P 		42.6
(-1.1)
P 		27
(-2.3)
P 		78
avr 59
(3) 		39
(0.1) 		18.3
(-2.9) 		34.7
(-0.5) 		40.3
(0.3) 		17.3
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2708
Sequence Type Exemplar sequence
Representative Public ID C06C3.4 NCBI
Target Description C06C3.4 /REP_DB=WormBase Gene ID /WP=CE00885 /TR=Q17717 /GB=CAA85317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063595 NCBI Caenorhabditis elegans C06C3.4 (C06C3.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000008816 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9373509:9375760:1 11/11 None
C06C3.4 ENSEMBL cdna:known chromosome:CEL140:II:9373509:9375760:1 gene:C06C3.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008807 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9373505-9375019(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06C3.4
Entrez Gene 174485 Entrez gene
SwissProt Q17717 EMBL-EBI
WormBase CE32568 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85317 Hypothetical protein C06C3.4 [Caenorhabditis elegans] ref|NP_495996.2| C06C3.4 [Caenorhabditis elegans] 0.0
blast CAE65947 Hypothetical protein CBG11124 [Caenorhabditis briggsae] 2.0E-89
blast T19004 hypothetical protein C06C3.9 - Caenorhabditis elegans 4.0E-63
blast T19004 hypothetical protein C06C3.9 - Caenorhabditis elegans 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:177716_AT
gtatttcacattgtttttgtttccgtcgtattttctgctgatattgattttcctctaata
tgcgacaaggggtatcgagtatcgtcgataaatcgtgccaaaaccgcctacagcctcttg
ggtagtctaacagtagaatgtgagcaaattgctctcgctgagagcacaaattgtgctcca
caacagagtgttccaaagtgcacgggtttgttggaaggatgtactggtaacacatggcta
ggaggatttcacgtctatctgcttgaaaacactacacaagccgcagtgcttgacccagtt
tgttgctcatctccttcagtccaaattgatgcgggatcttgtataaatgatcaattaaat
accggaactcgcgacttttctcactccatcgtcgctgatttggtactaaaattcaaatta
aactttcacaatcctcaaaaatacaggtgtaccgaggatggcaatccgaatgtgaagagt
gctcatgtgaatgtggaattgagcaatgctcaaatggggcaagtccagttcgagttattc
ataaaaaacttcttcttccatgtgcatcttgcaatttttctgacttcatttcaatttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTCACATTGTTTTTGTTTCCG 54 453 37 Antisense
TCACATTGTTTTTGTTTCCGTCGTA 453 625 42 Antisense
TTGTTTCCGTCGTATTTTCTGCTGA 506 705 53 Antisense
TTCCGTCGTATTTTCTGCTGATATT 341 699 57 Antisense
ATTTTCTGCTGATATTGATTTTCCT 253 15 66 Antisense
GACAAGGGGTATCGAGTATCGTCGA 639 363 100 Antisense
GAGTATCGTCGATAAATCGTGCCAA 397 399 113 Antisense
ATAAATCGTGCCAAAACCGCCTACA 589 23 124 Antisense
TCTTGCAATTTTTCTGACTTCATTT 254 619 603 Antisense
GCAATTTTTCTGACTTCATTTCAAT 390 323 607 Antisense
TTTTCTGACTTCATTTCAATTTCTA 472 677 612 Antisense
Sequence Source Affymetrix Proprietary Database