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[177715_s_at]

Description ZC13.3 /REP_DB=WormBase Gene ID /WP=CE14988 /TR=Q94310 /GB=AAB07581.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 33
(-3)
A 		284.8
(2.5)
P 		308.2
(3)
P 		58.4
(-2.4)
A 		275
B 42.3
(-2.8)
A 		351.7
(3)
A 		266.3
(1.4)
P 		34.3
(-3)
A 		317
C 55
(-2.3)
A 		351.5
(3)
P 		348.4
(2.9)
P 		12.8
(-3)
A 		339
avr 43.4
(-2.8) 		329.3
(3) 		307.6
(2.6) 		35.2
(-3) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 137.6
(-2.3)
A 		297.1
(3)
P 		180
(-0.9)
P 		243
(1.2)
P 		258.4
(1.7)
P 		115.4
(-3)
A 		182
B 123.7
(-3)
A 		194.9
(-0.7)
P 		224.2
(0.2)
P 		313
(3)
P 		215.4
(-0.1)
P 		143.3
(-2.4)
P 		189
C 81.5
(-3)
A 		235.8
(1.8)
P 		215.4
(1.2)
P 		274
(3)
P 		222.8
(1.4)
P 		155.8
(-0.7)
P 		193
avr 114.3
(-3) 		242.6
(1.7) 		206.5
(0.4) 		276.7
(3) 		232.2
(1.4) 		138.2
(-2.1) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 12
(-2.7)
A 		61.8
(1.4)
P 		80.6
(3)
P 		8.5
(-3)
A 		72
B 13.5
(-2.5)
A 		86.9
(3)
A 		61.7
(1.1)
P 		7.3
(-3)
A 		80
C 18.2
(-2.2)
A 		101.1
(2)
P 		121.4
(3)
P 		2.2
(-3)
A 		119
avr 14.6
(-2.4) 		83.3
(2.7) 		87.9
(3) 		6
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 25.4
(-3)
A 		105.6
(3)
P 		39.2
(-2)
P 		61.6
(-0.3)
P 		78
(0.9)
P 		28.1
(-2.8)
A 		80
B 43.1
(-3)
A 		64.9
(-0.1)
P 		54.5
(-1.5)
P 		82.9
(2.4)
P 		87.5
(3)
P 		53.5
(-1.6)
P 		44
C 30.2
(-3)
A 		71.9
(3)
P 		54.8
(0.5)
P 		55.1
(0.6)
P 		72.1
(3)
P 		52.1
(0.1)
P 		42
avr 32.9
(-3) 		80.8
(3) 		49.5
(-0.9) 		66.5
(1.2) 		79.2
(2.8) 		44.6
(-1.5) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177715_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18598
Sequence Type Exemplar sequence
Representative Public ID ZC13.3 NCBI
Target Description ZC13.3 /REP_DB=WormBase Gene ID /WP=CE14988 /TR=Q94310 /GB=AAB07581.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075772 NCBI Caenorhabditis elegans ZC13.3 (ZC13.3) mRNA, complete cds. 11/11 None
SNAP00000043701 ENSEMBL cdna:SNAP chromosome:CEL140:X:883208:888378:-1 11/11 None
GENEFINDER00000043711 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:883208:888378:-1 11/11 None
ZC13.3 ENSEMBL cdna:known chromosome:CEL140:X:882965:888392:-1 gene:ZC13.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:883207-888378(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC13.3
Entrez Gene 180439 Entrez gene
SwissProt Q95Q40 EMBL-EBI
WormBase CE14988 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL13329 Hypothetical protein ZC13.3 [Caenorhabditis elegans] ref|NP_508173.1| ZC13.3 [Caenorhabditis elegans] 0.0
blast CAE63605 Hypothetical protein CBG08096 [Caenorhabditis briggsae] 0.0
blast CAE59953 Hypothetical protein CBG03441 [Caenorhabditis briggsae] 7.0E-12
Sequence
Target Sequence 
>C. ELEGANS:177715_S_AT
ggactactacaccggagccaaaacaggatgactattgtgatattttaaattgcagttttg
atgatacggcatgcaactatctcaaccatggtctcacaaaaaagccatggacattgagaa
accgagggtacgggtatccattaaccggaactactgatatccgggcaactcaaacaaatg
gacagtttgtttctgctatattggatgctgaagacattgccattttggagtcaccaaagt
tcaacgcaaccagaagtctcaacgtgctactcttccagtatttcagaccatctcagatga
caacgattcgattatgtttagggtcaaggtacacgaatccaatgcgaacagtgtcttcat
tcgttcaatgcccgtcgattctgagatctgttacttcaaaaaatgcatatcgatggaaca
cggtgcatattcagttgccaccaggaactacgcatttctacttggtggctcacagcagtg
aaaaatccgaaagtagagcagcaattgccattgataatatgagagtcgcaatttgtgata
cacgaggctttgcaccggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTACTACACCGGAGCCAAAACA 583 521 1607 Antisense
TGCAACTATCTCAACCATGGTCTCA 434 577 1678 Antisense
GAACTACTGATATCCGGGCAACTCA 649 349 1754 Antisense
GAGTCACCAAAGTTCAACGCAACCA 374 397 1834 Antisense
AGAAGTCTCAACGTGCTACTCTTCC 344 75 1858 Antisense
CTTCCAGTATTTCAGACCATCTCAG 443 219 1878 Antisense
CAGTGTCTTCATTCGTTCAATGCCC 677 207 1955 Antisense
CAATGCCCGTCGATTCTGAGATCTG 146 183 1972 Antisense
TTCAGTTGCCACCAGGAACTACGCA 160 681 2036 Antisense
TTCTACTTGGTGGCTCACAGCAGTG 250 691 2062 Antisense
TGATACACGAGGCTTTGCACCGGAC 287 563 2142 Antisense
Sequence Source Affymetrix Proprietary Database