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[177713_at] 7TM receptor, sre family

Description ZC455.7 /REP_DB=WormBase Gene ID /WP=CE06596 /TR=Q23337 /GB=CAA99958.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 06      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 29.5
(-0.1)
P 		3.7
(-3)
A 		37.2
(0.7)
A 		57.8
(3)
P 		54
B 25.6
(0.9)
A 		3.4
(-3)
A 		32.6
(2.1)
A 		37.5
(3)
P 		34
C 26
(1.2)
P 		3.2
(-2.9)
A 		2.9
(-3)
A 		36.2
(3)
P 		33
avr 27
(0.5) 		3.4
(-3) 		24.2
(0.1) 		43.8
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 25.4
(-3)
A 		27.9
(-2.7)
A 		34.9
(-1.7)
A 		35.5
(-1.6)
P 		69.6
(3)
P 		28.9
(-2.5)
A 		44
B 18.9
(-2.1)
P 		25
(-1.5)
A 		9.5
(-3)
A 		44.6
(0.4)
P 		71.1
(3)
P 		10.1
(-2.9)
A 		62
C 27.4
(-0.7)
P 		25.9
(-0.8)
A 		13.5
(-1.9)
A 		68.7
(3)
P 		66.4
(2.8)
P 		1.3
(-3)
A 		67
avr 23.9
(-1.9) 		26.3
(-1.6) 		19.3
(-2.4) 		49.6
(0.9) 		69
(3) 		13.4
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.7
(3)
P 		0.8
(-3)
A 		9.7
(2.4)
A 		8.5
(1.7)
P 		10
B 8.2
(3)
A 		0.8
(-3)
A 		7.5
(2.4)
A 		8
(2.8)
P 		7
C 8.6
(3)
P 		0.9
(-3)
A 		1
(-2.9)
A 		6.1
(1.1)
P 		8
avr 9.2
(3) 		0.8
(-3) 		6.1
(0.8) 		7.5
(1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 4.7
(-3)
A 		9.9
(-1.1)
A 		7.6
(-1.9)
A 		9
(-1.4)
P 		21
(3)
P 		7
(-2.2)
A 		16
B 6.6
(-2)
P 		8.3
(-1.6)
A 		2.3
(-3)
A 		11.8
(-0.9)
P 		28.9
(3)
P 		3.8
(-2.7)
A 		27
C 10.2
(-0.2)
P 		7.9
(-0.9)
A 		3.4
(-2.1)
A 		13.8
(0.8)
P 		21.5
(3)
P 		0.4
(-3)
A 		21
avr 7.2
(-2) 		8.7
(-1.5) 		4.4
(-2.8) 		11.5
(-0.7) 		23.8
(3) 		3.7
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177713_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13461
Sequence Type Exemplar sequence
Representative Public ID ZC455.7 NCBI
Target Description ZC455.7 /REP_DB=WormBase Gene ID /WP=CE06596 /TR=Q23337 /GB=CAA99958.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073795 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-20) (sre-20) mRNA, complete cds. 11/11 None
GENEFINDER00000034481 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12785812:12790553:-1 11/11 None
ZC455.7 ENSEMBL cdna:known chromosome:CEL140:V:12785812:12787049:-1 gene:ZC455.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034469 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12785811-12787049(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-20
Ensembl ZC455.7
Entrez Gene 191175 Entrez gene
SwissProt Q23337 EMBL-EBI
WormBase CE06596 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99958 Hypothetical protein ZC455.7 [Caenorhabditis elegans] ref|NP_506196.1| Serpentine Receptor, class E (epsilon) family member (sre-20) [Caenorhabditis elegans] 1.0E-153
blast CAA99959 Hypothetical protein ZC455.10 [Caenorhabditis elegans] ref|NP_506197.1| FK506-Binding protein family member (fkb-4) [Caenorhabditis elegans] 1.0E-122
blast CAE63997 Hypothetical protein CBG08591 [Caenorhabditis briggsae] 1.0E-114
blast CAE63996 Hypothetical protein CBG08590 [Caenorhabditis briggsae] 1.0E-105
blast CAB04306 Hypothetical protein F36D1.2 [Caenorhabditis elegans] ref|NP_492897.1| Serpentine Receptor, class E (epsilon) family member (sre-22) [Caenorhabditis elegans] 7.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 4.6E-25
Pfam IPR001179 EMBL-EBI Peptidylprolyl isomerase, FKBP-type 2.0E-29
Pfam IPR001179 EMBL-EBI Peptidylprolyl isomerase, FKBP-type 3.8E-32
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 4.6E-25
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506196.1 7 4-26,39-61,76-98,119-141,146-168,208-230,245-262
ZC455.7 7 4-26,39-61,76-98,119-141,146-168,208-230,245-262
GENEFINDER00000034481 9 41-60,73-95,340-362,375-397,412-434,455-477,482-504,544-566,581-598
Sequence
Target Sequence 
>C. ELEGANS:177713_AT
gaagtctcgcgacatatttcgtttttgattatgagaagaaaaaacgtcgatacattctcg
tactacttttattattccaaaacttttttggtgcaacttttactcttttgacagtcaaca
atattcttcgatatatttctgcagctgttttagcagggattattgcaatttcttcatttt
tgacgtttttatacaattgtagaattaacaagcgaactttgcattttgttgaaactcgga
atagagacataaaatttgatttgagcgtcagatatcagctgcgcgaaaacgtcaaaacat
ttaagatgttgaactttttactgctaatgctcactggaatgattgttcttttggccattc
tcaaaacaattccaatgattataggtgttgaggagaaaacaaaatacatgttcaaaatga
gtacagatatgattgtgcacgcaggtccaatttatgttacgataactcttatatgtgctg
tggaagattatcgaatcattttctaccgatttttgggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCTCGCGACATATTTCGTTTT 95 337 317 Antisense
AACGTCGATACATTCTCGTACTACT 214 145 359 Antisense
TCTCGTACTACTTTTATTATTCCAA 536 609 372 Antisense
CAACTTTTACTCTTTTGACAGTCAA 109 187 410 Antisense
TCTTCGATATATTTCTGCAGCTGTT 365 617 441 Antisense
GCAATTTCTTCATTTTTGACGTTTT 304 323 481 Antisense
GAGCGTCAGATATCAGCTGCGCGAA 528 385 579 Antisense
GAACTTTTTACTGCTAATGCTCACT 577 349 627 Antisense
ATGATTGTTCTTTTGGCCATTCTCA 644 45 655 Antisense
TGTGCACGCAGGTCCAATTTATGTT 81 557 750 Antisense
ATCATTTTCTACCGATTTTTGGGAT 123 27 811 Antisense
Sequence Source Affymetrix Proprietary Database