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[177712_at]

Description C06C3.6 /REP_DB=WormBase Gene ID /WP=CE00887 /TR=Q17713 /GB=CAA85313.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 31      4grp_total > 44      6grp_cgc > 61      6grp_high1_sub > 03      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 66.6
(3)
P 		47.2
(-0.4)
P 		32.5
(-3)
A 		61
(2)
P 		34
B 40.1
(-0)
P 		50.7
(3)
P 		29.7
(-3)
A 		31.2
(-2.6)
A 		21
C 45.4
(1.9)
P 		54.5
(3)
P 		24
(-0.8)
M 		6.1
(-3)
A 		48
avr 50.7
(3) 		50.8
(3) 		28.7
(-3) 		32.8
(-1.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 47
(-1.6)
A 		38.2
(-3)
P 		75
(3)
P 		46.2
(-1.7)
A 		47.6
(-1.5)
P 		48
(-1.4)
P 		37
B 47.1
(3)
P 		44.2
(2.4)
P 		27.1
(-1)
P 		41.3
(1.8)
P 		33.1
(0.2)
P 		16.9
(-3)
A 		30
C 53.1
(0.6)
P 		76.7
(3)
P 		73
(2.6)
P 		67.9
(2.1)
M 		68.6
(2.2)
P 		17.7
(-3)
A 		59
avr 49.1
(1.2) 		53
(2) 		58.4
(3) 		51.8
(1.7) 		49.8
(1.3) 		27.5
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.3
(3)
P 		10.2
(-2.4)
P 		8.5
(-3)
A 		8.9
(-2.8)
P 		16
B 12.8
(3)
P 		12.5
(2.7)
P 		6.9
(-2.7)
A 		6.6
(-3)
A 		6
C 15
(2.7)
P 		15.7
(3)
P 		8.4
(0)
M 		1
(-3)
A 		15
avr 17.4
(3) 		12.8
(0.7) 		7.9
(-1.8) 		5.5
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.7
(-3)
A 		13.6
(0.9)
P 		16.3
(3)
P 		11.7
(-0.6)
A 		14.4
(1.5)
P 		11.7
(-0.6)
P 		8
B 16.4
(3)
P 		14.7
(2)
P 		6.6
(-2.8)
P 		10.9
(-0.3)
P 		13.4
(1.2)
P 		6.3
(-3)
A 		10
C 19.7
(1.7)
P 		23.4
(3)
P 		18.6
(1.4)
P 		13.7
(-0.3)
M 		22.2
(2.6)
P 		5.9
(-3)
A 		18
avr 14.9
(1.5) 		17.2
(3) 		13.8
(0.8) 		12.1
(-0.3) 		16.7
(2.7) 		8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3418
Sequence Type Exemplar sequence
Representative Public ID C06C3.6 NCBI
Target Description C06C3.6 /REP_DB=WormBase Gene ID /WP=CE00887 /TR=Q17713 /GB=CAA85313.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063598 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-48) (srh-48) mRNA, complete cds. 11/11 None
GENEFINDER00000008821 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9383300:9384801:1 11/11 None
C06C3.6 ENSEMBL cdna:known chromosome:CEL140:II:9383300:9384801:1 gene:C06C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9382127-9384798(+) 96.7 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-48
Ensembl C06C3.6
Entrez Gene 174486 Entrez gene
SwissProt Q17713 EMBL-EBI
WormBase CE35954 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85313 Hypothetical protein C06C3.6 [Caenorhabditis elegans] ref|NP_495999.2| Serpentine Receptor, class H family member (srh-48) [Caenorhabditis elegans] 0.0
blast CAE73568 Hypothetical protein CBG21038 [Caenorhabditis briggsae] 9.0E-53
blast AAB42244 Serpentine receptor, class h protein 49 [Caenorhabditis elegans] ref|NP_491816.1| Serpentine Receptor, class H family member (srh-49) [Caenorhabditis elegans] 2.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495999.2 7 34-56,77-99,119-137,158-180,221-243,263-285,295-317
C06C3.6 7 34-56,77-99,119-137,158-180,221-243,263-285,295-317
GENEFINDER00000008821 7 34-56,77-99,119-137,158-180,221-243,263-285,295-317
Sequence
Target Sequence 
>C. ELEGANS:177712_AT
tgaagataaacccatgtccggaccctttgtatttcactccatcaacatttgccgtggatt
cacaaagaaacgagtttagcatttgcattgtgattgttttaactgtggttttcatccagt
acacatttttcatttctcattgtatttggtacatatattctgaagacgccgtccgatatt
cgaagagtaccaggaaacttcaaaaaatgtttctctacgcttcattttctcagcttggaa
tttttgtgaccgtattcgttctcccactgggaatatttgcaatggttttgacaactggat
ataagaatcaaggactcctcaatatttgcaatttgataattccaacgataggaatgaata
catcaattggtttagtgacaatgtacaaaccatatcgagattatttcattggaattttta
aagaaggcggaaatggaattgttcctccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGATAAACCCATGTCCGGACCC 449 575 863 Antisense
GTATTTCACTCCATCAACATTTGCC 511 453 891 Antisense
TAACTGTGGTTTTCATCCAGTACAC 163 639 962 Antisense
TCCAGTACACATTTTTCATTTCTCA 48 591 977 Antisense
GAAGACGCCGTCCGATATTCGAAGA 355 339 1024 Antisense
TCAAAAAATGTTTCTCTACGCTTCA 537 629 1062 Antisense
TACGCTTCATTTTCTCAGCTTGGAA 400 649 1078 Antisense
GAATTTTTGTGACCGTATTCGTTCT 472 323 1100 Antisense
GTATTCGTTCTCCCACTGGGAATAT 409 449 1114 Antisense
AAGGACTCCTCAATATTTGCAATTT 426 161 1172 Antisense
CGGAAATGGAATTGTTCCTCCGCCA 239 243 1290 Antisense
Sequence Source Affymetrix Proprietary Database