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[177710_s_at]

Description C30H6.9 /REP_DB=WormBase Gene ID /WP=CE19707 /TR=Q9XVR5 /GB=CAB02805.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 19      4grp_high_8_8 > 47      6grp_highest_nonorm > 73      6grp_total > 95      4grp_total > 48      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 558.7
(-3)
P 		592.6
(-1.9)
P 		746.1
(3)
P 		563.4
(-2.8)
P 		187
B 502.6
(-3)
P 		596.4
(-0.6)
P 		733.7
(3)
P 		698.4
(2.1)
P 		231
C 496.9
(-2.2)
P 		645.6
(1.7)
P 		695.9
(3)
P 		466
(-3)
P 		230
avr 519.4
(-3) 		611.5
(-0.3) 		725.2
(3) 		575.9
(-1.4) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 629.7
(2)
P 		468.1
(-3)
P 		587.5
(0.7)
P 		514
(-1.6)
P 		662.2
(3)
P 		580.3
(0.5)
P 		194
B 714.3
(3)
P 		517.2
(-3)
P 		674.1
(1.8)
P 		625.3
(0.3)
P 		624.6
(0.3)
P 		604.1
(-0.4)
P 		197
C 512.2
(-2.1)
P 		484.3
(-3)
P 		574.4
(0.1)
P 		605.6
(1.1)
P 		572.4
(-0)
P 		661.2
(3)
P 		177
avr 618.7
(3) 		489.9
(-3) 		612
(2.6) 		581.6
(1.2) 		619.7
(3) 		615.2
(2.8) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 203.4
(3)
P 		128.6
(-0.7)
P 		195
(2.6)
P 		82.5
(-3)
P 		121
B 160.3
(0.4)
P 		147.3
(-3)
P 		170
(3)
P 		148.8
(-2.6)
P 		23
C 164.5
(0.1)
P 		185.6
(0.9)
P 		242.6
(3)
P 		78.6
(-3)
P 		164
avr 176.1
(1.4) 		153.8
(0.1) 		202.5
(3) 		103.3
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 116.1
(-3)
P 		166.5
(0.6)
P 		127.9
(-2.2)
P 		130.4
(-2)
P 		199.8
(3)
P 		141.3
(-1.2)
P 		84
B 248.5
(2.6)
P 		172.2
(-2.4)
P 		163.7
(-3)
P 		165.6
(-2.9)
P 		253.8
(3)
P 		225.3
(1.1)
P 		90
C 189.9
(1.1)
P 		147.8
(-1.4)
P 		146.2
(-1.5)
P 		121.8
(-3)
P 		185.2
(0.8)
P 		221.4
(3)
P 		100
avr 184.8
(0.7) 		162.2
(-1.1) 		145.9
(-2.5) 		139.3
(-3) 		212.9
(3) 		196
(1.6) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177710_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10036
Sequence Type Exemplar sequence
Representative Public ID C30H6.9 NCBI
Target Description C30H6.9 /REP_DB=WormBase Gene ID /WP=CE19707 /TR=Q9XVR5 /GB=CAB02805.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070698 NCBI Caenorhabditis elegans C30H6.9 (C30H6.9) mRNA, complete cds. 11/11 None
SNAP00000029651 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17376050:17380124:-1 10/11 None
GENEFINDER00000029660 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17379361:17380124:-1 11/11 None
C30H6.9 ENSEMBL cdna:known chromosome:CEL140:IV:17379309:17380124:-1 gene:C30H6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17379366-17380130(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30H6.9
Entrez Gene 178523 Entrez gene
SwissProt Q9XVR5 EMBL-EBI
WormBase CE19707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02805 Hypothetical protein C30H6.9 [Caenorhabditis elegans] ref|NP_503099.1| C30H6.9 [Caenorhabditis elegans] 1.0E-111
blast CAB02805 Hypothetical protein C30H6.9 [Caenorhabditis elegans] ref|NP_503099.1| C30H6.9 [Caenorhabditis elegans] 1.0E-103
blast CAE57442 Hypothetical protein CBG00404 [Caenorhabditis briggsae] 2.0E-99
blast CAE57442 Hypothetical protein CBG00404 [Caenorhabditis briggsae] 5.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503099.1 1 46-65
C30H6.9 1 46-65
SNAP00000029651 1 46-65
GENEFINDER00000029660 1 46-65
Sequence
Target Sequence 
>C. ELEGANS:177710_S_AT
ccgttctgtgccacgactacaaggatggacgccgattcgatttaactctcaacaagtgga
cccagcaaaactgaaagcgtttcaggaaagaattgataaagccaaaatacgccgcgctta
tgctctcggaggttgcctcatgtttatctggatttcgacgcatggaattcttctttacaa
acgtcgaagcgaacatcgaaatctcaatgaaaaattgccaccgatttcttgggaaaattt
tgagcaaacatatctagcgactggcgacgtcaaaactatcatttttcaaccacactttga
gacagcgaatgtatatttaaattccgccagagaacaacagatgaagaagagttttgttga
tttagttcatacaactcccgacaaattttctcgccctccagatgtccgattctatttgga
agcttcatcagaagatgttcaatctttagtggccgctgcttcacaaaaatacaagcacca
cgtcgactttgagattgatcaatttcccagctaccgggagctgtctttcatcgtaggatc
ctcactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTTCTGTGCCACGACTACAAGGA 80 263 33 Antisense
GACGCCGATTCGATTTAACTCTCAA 249 381 60 Antisense
CAAAATACGCCGCGCTTATGCTCTC 196 191 135 Antisense
GAGGTTGCCTCATGTTTATCTGGAT 279 403 161 Antisense
AACTATCATTTTTCAACCACACTTT 428 139 306 Antisense
CATACAACTCCCGACAAATTTTCTC 28 213 400 Antisense
CCCTCCAGATGTCCGATTCTATTTG 155 259 426 Antisense
GATGTTCAATCTTTAGTGGCCGCTG 499 409 466 Antisense
ACAAGCACCACGTCGACTTTGAGAT 190 113 503 Antisense
GATCAATTTCCCAGCTACCGGGAGC 153 421 529 Antisense
GTCTTTCATCGTAGGATCCTCACTC 424 467 555 Antisense
Sequence Source Affymetrix Proprietary Database