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[177709_at]

Description F57C7.4 /REP_DB=WormBase Gene ID /WP=CE28342 /TR=Q20945 /GB=CAA93471.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 23      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 118.8
(2.9)
P 		51.6
(-3)
A 		51.6
(-3)
A 		119.6
(3)
P 		68
B 122.1
(3)
P 		45.6
(-2.4)
A 		36.5
(-3)
A 		70.3
(-0.6)
A 		86
C 123.3
(3)
P 		63.8
(-1.6)
A 		46.2
(-3)
A 		115.6
(2.4)
P 		77
avr 121.4
(3) 		53.7
(-2.3) 		44.8
(-3) 		101.8
(1.5) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 87
(3)
A 		43.6
(-1.5)
A 		28.7
(-3)
A 		40
(-1.8)
A 		43.7
(-1.5)
A 		65.5
(0.8)
A 		58
B 47.3
(0.9)
A 		59.2
(3)
A 		59.3
(3)
A 		25
(-3)
A 		30.9
(-2)
A 		28.7
(-2.4)
A 		34
C 72.4
(2.9)
P 		73.8
(3)
A 		34.2
(-0.9)
A 		12.4
(-3)
A 		54
(1.1)
A 		59.8
(1.6)
A 		61
avr 68.9
(3) 		58.9
(1.6) 		40.7
(-0.9) 		25.8
(-3) 		42.9
(-0.6) 		51.3
(0.5) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 43.3
(3)
P 		11.2
(-3)
A 		13.5
(-2.6)
A 		17.5
(-1.8)
P 		32
B 38.9
(3)
P 		11.3
(-2.4)
A 		8.5
(-3)
A 		15
(-1.7)
A 		30
C 40.8
(3)
P 		18.3
(-2.5)
A 		16.1
(-3)
A 		19.5
(-2.2)
P 		25
avr 41
(3) 		13.6
(-2.8) 		12.7
(-3) 		17.3
(-2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 16
(3)
A 		15.5
(2.7)
A 		6.3
(-3)
A 		10.1
(-0.6)
A 		13.2
(1.3)
A 		15.9
(2.9)
A 		10
B 16.5
(1.5)
A 		19.7
(3)
A 		14.4
(0.6)
A 		6.6
(-3)
A 		12.5
(-0.3)
A 		10.7
(-1.1)
A 		13
C 26.8
(3)
P 		22.5
(1.9)
A 		8.7
(-1.5)
A 		2.5
(-3)
A 		17.5
(0.7)
A 		20
(1.3)
A 		24
avr 19.8
(3) 		19.2
(2.7) 		9.8
(-1.5) 		6.4
(-3) 		14.4
(0.6) 		15.5
(1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16630
Sequence Type Exemplar sequence
Representative Public ID F57C7.4 NCBI
Target Description F57C7.4 /REP_DB=WormBase Gene ID /WP=CE28342 /TR=Q20945 /GB=CAA93471.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077373 NCBI Caenorhabditis elegans F57C7.4 (F57C7.4) mRNA, complete cds. 11/11 None
SNAP00000028643 ENSEMBL cdna:SNAP chromosome:CEL140:X:10580983:10586502:-1 11/11 None
GENEFINDER00000028650 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10580983:10589464:-1 11/11 None
F57C7.4 ENSEMBL cdna:known chromosome:CEL140:X:10585053:10588777:-1 gene:F57C7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10585052-10588777(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C7.4
Entrez Gene 186444 Entrez gene
SwissProt Q20945 EMBL-EBI
WormBase CE28342 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93471 Hypothetical protein F57C7.4 [Caenorhabditis elegans] ref|NP_509774.1| F57C7.4 [Caenorhabditis elegans] 0.0
blast CAE60806 Hypothetical protein CBG04503 [Caenorhabditis briggsae] 0.0
blast CAA93472 Hypothetical protein F57C7.5 [Caenorhabditis elegans] ref|NP_509773.2| F57C7.5 [Caenorhabditis elegans] 0.0
blast CAE60805 Hypothetical protein CBG04502 [Caenorhabditis briggsae] 1.0E-179
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028650 1 1491-1513
Sequence
Target Sequence 
>C. ELEGANS:177709_AT
tgtatcgtcacaattgcagcaactcaaattccaacagttacattttatagactcgcagag
aaaaaacaaaatgcttttgattatatcagaatccaagcattagtaagttcgtcattgcca
accttgaatatcacatgggaagttgttcgagatcctcagtttggttatttcaatatttca
tcgtttatatctaaccctactacaattataaaaaatgttccatcaaaatctgacgtattt
gtatcattcacaattccacctgcaggaacacaacttgccatgtggccaggattgatgagt
ggtaaaacctttgtgatccggctttgggcgtctaatgaaaaaggatcttcgttttcggat
ttgcacttgtctacgaatgcgccaccaaccaaaggaaatattgatatatctgtaccgttt
tatccaccgtttgctcttgaaactccagttacattttctgttggtgatggttggaatgat
gataaagacgacttgcctttgacatatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATCGTCACAATTGCAGCAACTC 336 561 1684 Antisense
GTAAGTTCGTCATTGCCAACCTTGA 39 463 1786 Antisense
GTTGTTCGAGATCCTCAGTTTGGTT 342 435 1825 Antisense
TCATCGTTTATATCTAACCCTACTA 494 607 1861 Antisense
ATCATTCACAATTCCACCTGCAGGA 381 31 1926 Antisense
GGAACACAACTTGCCATGTGGCCAG 635 527 1948 Antisense
GTGGTAAAACCTTTGTGATCCGGCT 222 489 1982 Antisense
GGATCTTCGTTTTCGGATTTGCACT 287 509 2026 Antisense
TGCACTTGTCTACGAATGCGCCACC 580 577 2045 Antisense
TATCCACCGTTTGCTCTTGAAACTC 671 643 2104 Antisense
AGACGACTTGCCTTTGACATATCAG 204 71 2169 Antisense
Sequence Source Affymetrix Proprietary Database