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[177707_at]

Description F41E7.1 /REP_DB=WormBase Gene ID /WP=CE03301 /TR=Q20273 /GB=CAA92124.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 759.5
(3)
P 		733.2
(1.9)
P 		614.3
(-3)
P 		710.4
(1)
P 		145
B 788.2
(3)
P 		643.7
(-3)
P 		669.4
(-1.9)
P 		648.5
(-2.8)
P 		145
C 694.2
(3)
P 		624.5
(-3)
P 		685
(2.2)
P 		668.5
(0.8)
P 		70
avr 747.3
(3) 		667.1
(-2.3) 		656.2
(-3) 		675.8
(-1.7) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1087
1 2 3 4 5 6 range
A 1314.9
(3)
P 		1017.3
(1.4)
P 		701.8
(-0.4)
P 		535.4
(-1.3)
P 		384.1
(-2.1)
P 		227.9
(-3)
P 		1087
B 944.2
(2.4)
P 		1016.7
(3)
P 		972.1
(2.6)
P 		537.3
(-1.1)
P 		311.2
(-3)
P 		319.1
(-2.9)
P 		706
C 870.9
(1.4)
P 		1080
(3)
P 		997.3
(2.4)
P 		693.2
(0.1)
P 		303
(-2.8)
P 		278.1
(-3)
P 		802
avr 1043.3
(3) 		1038
(3) 		890.4
(1.8) 		588.6
(-0.6) 		332.8
(-2.5) 		275
(-3) 		768
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 276.5
(3)
P 		159.2
(-1.1)
P 		160.6
(-1)
P 		104
(-3)
P 		173
B 251.4
(3)
P 		159
(-1.9)
P 		155.1
(-2.1)
P 		138.2
(-3)
P 		113
C 229.8
(2.6)
P 		179.6
(0.2)
P 		238.7
(3)
P 		112.7
(-3)
P 		126
avr 252.6
(3) 		165.9
(-0.9) 		184.8
(-0) 		118.3
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 242.4
(0.7)
P 		361.8
(3)
P 		152.8
(-1.1)
P 		135.8
(-1.4)
P 		115.9
(-1.8)
P 		55.5
(-3)
P 		306
B 328.5
(2.7)
P 		338.4
(3)
P 		236.1
(0.2)
P 		142.3
(-2.4)
P 		126.4
(-2.8)
P 		119
(-3)
P 		219
C 322.8
(2.8)
P 		329.5
(3)
P 		253.8
(1.1)
P 		139.4
(-1.8)
P 		98
(-2.9)
P 		93.1
(-3)
P 		236
avr 297.9
(1.9) 		343.2
(3) 		214.2
(-0) 		139.2
(-1.8) 		113.4
(-2.4) 		89.2
(-3) 		254
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16608
Sequence Type Exemplar sequence
Representative Public ID F41E7.1 NCBI
Target Description F41E7.1 /REP_DB=WormBase Gene ID /WP=CE03301 /TR=Q20273 /GB=CAA92124.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077323 NCBI Caenorhabditis elegans F41E7.1 (F41E7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000016503 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10279562:10282438:1 11/11 None
SNAP00000016488 ENSEMBL cdna:SNAP chromosome:CEL140:X:10280870:10282438:1 11/11 None
F41E7.1 ENSEMBL cdna:known chromosome:CEL140:X:10279528:10282590:1 gene:F41E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10279561-10282438(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E7.1
Entrez Gene 181236 Entrez gene
SwissProt Q20273 EMBL-EBI
WormBase CE03301 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625975_AT dm
DROSGENOME1:150408_AT dm
DROSGENOME1:150405_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA92124 Hypothetical protein F41E7.1 [Caenorhabditis elegans] ref|NP_509724.1| F41E7.1 [Caenorhabditis elegans] 0.0
blast CAE70554 Hypothetical protein CBG17199 [Caenorhabditis briggsae] 0.0
blast CAB05535 Hypothetical protein F57G8.5 [Caenorhabditis elegans] ref|NP_507130.2| F57G8.5 [Caenorhabditis elegans] 1.0E-179
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509724.1 10 20-42,62-81,93-115,152-174,181-203,218-237,250-272,282-304,369-391,440-462
F41E7.1 10 20-42,62-81,93-115,152-174,181-203,218-237,250-272,282-304,369-391,440-462
GENEFINDER00000016503 10 20-42,62-81,93-115,152-174,181-203,218-237,250-272,282-304,369-391,440-462
SNAP00000016488 7 31-53,60-82,97-116,129-151,161-183,248-270,319-341
Sequence
Target Sequence 
>C. ELEGANS:177707_AT
tacatatgggattccttcgcgcttccacttctttttatctgcctcggaatgaagtttgac
tgctcaactctgacatgggagattgtgtttttgtgcattgctgttattgcaattggtctg
ttagtaagaacgattttggtaatgttggtaacactctcctcacacattaatttcaaagag
caaattgttgttgctctgagcttgcttccaagagccactttccaggccgaccttgctcca
actctacttttgatggctacaccattcccagacatggccaaggatgcagcactcatctta
aaagctgccattttatctgttctaatcacagctcctatttttgatattcttctcaatctt
gttggatctaaatgtctctctcaatacaatccacaggatgcgccggcaattgagaaaaat
tttgacaaaacctatatgaatggtgatcatgttgatgaaaccatctatgccgcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATATGGGATTCCTTCGCGCTTC 17 645 1036 Antisense
TTGACTGCTCAACTCTGACATGGGA 29 701 1091 Antisense
ACTCTCCTCACACATTAATTTCAAA 177 99 1188 Antisense
TGAGCTTGCTTCCAAGAGCCACTTT 497 567 1232 Antisense
TTGCTCCAACTCTACTTTTGATGGC 272 703 1268 Antisense
TTTGATGGCTACACCATTCCCAGAC 14 667 1284 Antisense
GACATGGCCAAGGATGCAGCACTCA 588 367 1306 Antisense
AAGCTGCCATTTTATCTGTTCTAAT 22 151 1337 Antisense
GTTCTAATCACAGCTCCTATTTTTG 700 443 1354 Antisense
GTCTCTCTCAATACAATCCACAGGA 182 471 1409 Antisense
TTGATGAAACCATCTATGCCGCCCG 276 707 1487 Antisense
Sequence Source Affymetrix Proprietary Database