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[177706_at]

Description F58D5.7 /REP_DB=WormBase Gene ID /WP=CE25024 /TR=Q9NLC7 /GB=CAB70242.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 29.7
(-1.9)
A 		24.8
(-3)
A 		44
(1.2)
A 		52.1
(3)
A 		27
B 21.5
(-3)
A 		54.7
(3)
A 		50.7
(2.3)
A 		32.8
(-1)
A 		33
C 48
(3)
A 		20.6
(-0.8)
A 		4.8
(-3)
A 		16.4
(-1.4)
A 		43
avr 33.1
(-3) 		33.4
(-0.4) 		33.2
(-2.1) 		33.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 8.4
(-3)
A 		28.6
(-2.2)
A 		13.4
(-2.8)
A 		25.5
(-2.4)
A 		102.8
(0.5)
P 		168.4
(3)
P 		160
B 44.3
(-1.5)
A 		5
(-3)
A 		56
(-1.1)
A 		77.2
(-0.3)
A 		94.5
(0.3)
P 		167.5
(3)
P 		163
C 35.1
(-2.2)
A 		60
(-1.4)
A 		10.1
(-3)
A 		33.1
(-2.3)
A 		82.5
(-0.7)
P 		195.1
(3)
P 		185
avr 29.3
(-2.9) 		31.2
(-2.8) 		26.5
(-3) 		45.3
(-2.3) 		93.3
(-0.3) 		177
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.8
(2.3)
A 		5.4
(-3)
A 		11.5
(3)
A 		7.6
(-0.8)
A 		6
B 6.9
(-3)
A 		13.5
(3)
A 		11.7
(1.4)
A 		7
(-2.9)
A 		7
C 15.9
(3)
A 		5.9
(-1.2)
A 		1.7
(-3)
A 		2.8
(-2.5)
A 		14
avr 11.2
(3) 		8.3
(-0.2) 		8.3
(-0.2) 		5.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 1.5
(-3)
A 		10.2
(-1.7)
A 		2.9
(-2.8)
A 		6.5
(-2.2)
A 		31
(1.5)
P 		41
(3)
P 		40
B 15.4
(-1.6)
A 		1.7
(-3)
A 		13.6
(-1.8)
A 		20.4
(-1.2)
A 		38.4
(0.6)
P 		62.5
(3)
P 		61
C 13
(-2)
A 		18.3
(-1.5)
A 		2.6
(-3)
A 		6.7
(-2.6)
A 		26.7
(-0.7)
P 		65.3
(3)
P 		63
avr 10
(-2.6) 		10.1
(-2.6) 		6.4
(-3) 		11.2
(-2.4) 		32
(0.1) 		56.3
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.507
Sequence Type Exemplar sequence
Representative Public ID F58D5.7 NCBI
Target Description F58D5.7 /REP_DB=WormBase Gene ID /WP=CE25024 /TR=Q9NLC7 /GB=CAB70242.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060643 NCBI Caenorhabditis elegans F58D5.7 (F58D5.7) mRNA, complete cds. 11/11 None
GENEFINDER00000034707 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12040491:12041757:-1 11/11 None
F58D5.7 ENSEMBL cdna:known chromosome:CEL140:I:12040456:12041825:-1 gene:F58D5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034696 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12040421-12041756(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58D5.7
Entrez Gene 173082 Entrez gene
SwissProt Q9NLC7 EMBL-EBI
WormBase CE25024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70242 Hypothetical protein F58D5.7 [Caenorhabditis elegans] ref|NP_493044.1| F58D5.7 [Caenorhabditis elegans] 1.0E-122
blast CAB70242 Hypothetical protein F58D5.7 [Caenorhabditis elegans] ref|NP_493044.1| F58D5.7 [Caenorhabditis elegans] 1.0E-119
blast CAA99816 Hypothetical protein C54G4.3 [Caenorhabditis elegans] ref|NP_492202.1| C54G4.3 [Caenorhabditis elegans] 4.0E-97
blast CAA99816 Hypothetical protein C54G4.3 [Caenorhabditis elegans] ref|NP_492202.1| C54G4.3 [Caenorhabditis elegans] 5.0E-97
blast CAE63719 Hypothetical protein CBG08242 [Caenorhabditis briggsae] 3.0E-64
Sequence
Target Sequence 
>C. ELEGANS:177706_AT
ggcaactgctgatcaggcgttggcctctacactgatggtcaaggacgtccagctgttgga
aaagaaggtcaatattctgaaggattctgtgattcaagttaacaaggcattctacaagta
tgagaaggatgttgacatgaaagatttgatggatcaagttactgacatggtgcatcgtac
ggaaaagaaggagcaagatgcgttggagccccatgcgactgatgagcaagctatcgagaa
agccttccgtggagcaattgaaggcctttatggcctgaaatcttccaatccaaaggtcat
ggaggaagctaagctgttggctggagaaatgcgtgttttcagagatgctgctgctaacaa
gaacttccactcgatgatctcaaaagttgcgcctggtaaatcgggagtttccttggattc
cagcagctctgagagctcattttcgacttctgcatcctcctcgctggccaaaccgaatgg
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAACTGCTGATCAGGCGTTGGCC 391 535 264 Antisense
TTGGCCTCTACACTGATGGTCAAGG 413 705 283 Antisense
TGGTCAAGGACGTCCAGCTGTTGGA 496 551 299 Antisense
AGCCCCATGCGACTGATGAGCAAGC 234 81 470 Antisense
AGCTATCGAGAAAGCCTTCCGTGGA 587 77 492 Antisense
TATGGCCTGAAATCTTCCAATCCAA 290 655 532 Antisense
AGAACTTCCACTCGATGATCTCAAA 198 73 623 Antisense
GCGCCTGGTAAATCGGGAGTTTCCT 703 285 652 Antisense
GAGTTTCCTTGGATTCCAGCAGCTC 80 399 668 Antisense
TGAGAGCTCATTTTCGACTTCTGCA 164 569 693 Antisense
TCCTCGCTGGCCAAACCGAATGGAA 386 589 721 Antisense
Sequence Source Affymetrix Proprietary Database