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[177705_at]

Description T26H2.1 /REP_DB=WormBase Gene ID /WP=CE16487 /TR=O18134 /GB=CAB04843.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 5.8
(-3)
A 		44.7
(3)
A 		23.6
(-0.3)
A 		32.1
(1.1)
A 		39
B 28.8
(0.5)
A 		48
(3)
A 		11.5
(-1.8)
A 		2.1
(-3)
A 		46
C 30.4
(2)
A 		26.4
(-3)
A 		27.5
(-1.6)
A 		31.2
(3)
A 		5
avr 21.7
(-2.7) 		39.7
(3) 		20.9
(-3) 		21.8
(-2.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 77
(3)
A 		18.6
(-1.8)
A 		15.2
(-2.1)
A 		3.9
(-3)
A 		16.5
(-2)
A 		29.8
(-0.9)
A 		73
B 15.6
(0.1)
A 		10.7
(-1.7)
A 		23.9
(3)
A 		6.9
(-3)
A 		17.9
(0.9)
A 		23.7
(2.9)
M 		17
C 7.7
(-2.3)
A 		24.8
(0.4)
A 		3.5
(-3)
A 		5.3
(-2.7)
A 		11.4
(-1.7)
A 		41.1
(3)
A 		38
avr 33.4
(3) 		18
(-0.3) 		14.2
(-1.1) 		5.4
(-3) 		15.3
(-0.9) 		31.5
(2.6) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-3)
A 		9.7
(3)
A 		6.2
(0.2)
A 		4.7
(-0.9)
A 		8
B 9.2
(1.6)
A 		11.9
(3)
A 		2.7
(-1.8)
A 		0.5
(-3)
A 		11
C 10.1
(3)
A 		7.6
(-0.1)
A 		9.6
(2.4)
A 		5.3
(-3)
A 		5
avr 7.1
(0.5) 		9.7
(3) 		6.2
(-0.4) 		3.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 14.2
(3)
A 		6.6
(-0.5)
A 		3.3
(-2)
A 		1
(-3)
A 		5
(-1.2)
A 		7.2
(-0.2)
A 		13
B 5.4
(0)
A 		3.6
(-1.5)
A 		5.8
(0.4)
A 		1.8
(-3)
A 		7.3
(1.6)
A 		8.9
(3)
M 		7
C 2.8
(-2.1)
A 		7.6
(0.1)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		3.7
(-1.7)
A 		13.8
(3)
A 		13
avr 7.5
(1.3) 		5.9
(0.2) 		3.3
(-1.6) 		1.3
(-3) 		5.3
(-0.2) 		10
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13529
Sequence Type Exemplar sequence
Representative Public ID T26H2.1 NCBI
Target Description T26H2.1 /REP_DB=WormBase Gene ID /WP=CE16487 /TR=O18134 /GB=CAB04843.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075341 NCBI Caenorhabditis elegans T26H2.1 (T26H2.1) mRNA, complete cds. 11/11 None
SNAP00000014896 ENSEMBL cdna:SNAP chromosome:CEL140:V:19242987:19244197:1 11/11 None
GENEFINDER00000014903 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19242987:19244197:1 10/11 None
T26H2.1 ENSEMBL cdna:known chromosome:CEL140:V:19242927:19244197:1 gene:T26H2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19242926-19244197(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26H2.1
Entrez Gene 188946 Entrez gene
SwissProt O18134 EMBL-EBI
WormBase CE16487 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04843 Hypothetical protein T26H2.1 [Caenorhabditis elegans] ref|NP_507742.1| T26H2.1 [Caenorhabditis elegans] 0.0
blast CAB04845 Hypothetical protein T26H2.3 [Caenorhabditis elegans] ref|NP_507740.1| T26H2.3 [Caenorhabditis elegans] 1.0E-159
blast CAB04845 Hypothetical protein T26H2.3 [Caenorhabditis elegans] ref|NP_507740.1| T26H2.3 [Caenorhabditis elegans] 1.0E-147
blast T32324 hypothetical protein C41H7.2 - Caenorhabditis elegans 7.0E-19
blast T32324 hypothetical protein C41H7.2 - Caenorhabditis elegans 8.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:177705_AT
gccagacgccacaaggctaactcggacaaactaattttcagagccatcatgcctgttgta
aatgccctggagattaatgaaaatcggatggaaaatgatcttccactggtgttcatccag
aacttggataagttcaagtctttttacatttctcatcagtatcagttaaatgatatattg
atgatgaactgtgagcatatacatctatccagtgatgcacaggctttatcgataaaggac
ctgaacttgttcttgaaatgctggatgaaaggatcgaatatgaacctggagtatctggtt
atttatggccgaaatgcccatggttccaatgtcgtagatgtggtgaatgggattaaacac
ttggagatttccaaaacccttgacctgtgtttccaactacccaggaaacttcattccttt
atttctttgaaaggaagctcatctttgcatcataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGACGCCACAAGGCTAACTCGG 403 275 640 Antisense
ATTTTCAGAGCCATCATGCCTGTTG 191 15 673 Antisense
ATGCCTGTTGTAAATGCCCTGGAGA 470 41 688 Antisense
AATGATCTTCCACTGGTGTTCATCC 295 165 733 Antisense
AAGTCTTTTTACATTTCTCATCAGT 25 157 775 Antisense
TCCAGTGATGCACAGGCTTTATCGA 352 587 847 Antisense
GAAATGCCCATGGTTCCAATGTCGT 443 361 950 Antisense
TGGAGATTTCCAAAACCCTTGACCT 277 549 1001 Antisense
GACCTGTGTTTCCAACTACCCAGGA 689 381 1021 Antisense
GAAACTTCATTCCTTTATTTCTTTG 189 357 1044 Antisense
AAGGAAGCTCATCTTTGCATCATAA 403 161 1070 Antisense
Sequence Source Affymetrix Proprietary Database