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[177702_at]

Description F56H6.3 /REP_DB=WormBase Gene ID /WP=CE16131 /TR=O45582 /GB=CAB04493.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 80      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 36.3
(-3)
P 		85.5
(0.6)
P 		58.9
(-1.4)
P 		118.8
(3)
P 		83
B 32
(-3)
P 		70.1
(3)
P 		35.8
(-2.4)
P 		46.2
(-0.8)
A 		38
C 39.5
(-2.2)
A 		31.4
(-2.7)
A 		26.1
(-3)
A 		132.5
(3)
P 		106
avr 35.9
(-3) 		62.3
(-0.5) 		40.3
(-2.6) 		99.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 43.5
(1.6)
A 		18.4
(-3)
A 		36
(0.3)
P 		50.8
(3)
P 		46
(2.1)
A 		19
(-2.9)
P 		32
B 31.5
(1.9)
A 		34.5
(3)
P 		27
(0.3)
A 		32.2
(2.2)
A 		33.7
(2.7)
A 		18.1
(-3)
A 		16
C 13.2
(-2)
A 		26.4
(-0.3)
A 		22.8
(-0.8)
A 		53
(3)
A 		4.8
(-3)
A 		21.9
(-0.9)
A 		48
avr 29.4
(-0.7) 		26.4
(-1.4) 		28.6
(-0.9) 		45.3
(3) 		28.2
(-1) 		19.7
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 13.2
(-3)
P 		18.6
(3)
P 		15.4
(-0.6)
P 		17.4
(1.7)
P 		5
B 10.2
(-1.7)
P 		17.3
(3)
P 		8.3
(-3)
P 		9.9
(-1.9)
A 		9
C 13.1
(-1.2)
A 		9
(-3)
A 		9.1
(-3)
A 		22.3
(3)
P 		13
avr 12.2
(-1.6) 		15
(1.4) 		10.9
(-3) 		16.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8
(-0.8)
A 		6.5
(-1.8)
A 		7.8
(-0.9)
P 		12.9
(2.4)
P 		13.9
(3)
A 		4.6
(-3)
P 		9
B 11
(0.8)
A 		11.5
(1.2)
P 		6.5
(-3)
A 		8.5
(-1.3)
A 		13.7
(3)
A 		6.7
(-2.8)
A 		7
C 4.9
(-0.8)
A 		8.1
(1.3)
A 		5.8
(-0.2)
A 		10.7
(3)
A 		1.6
(-3)
A 		7.3
(0.8)
A 		9
avr 8
(-0.6) 		8.7
(0.3) 		6.7
(-2.3) 		10.7
(3) 		9.7
(1.7) 		6.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1464
Sequence Type Exemplar sequence
Representative Public ID F56H6.3 NCBI
Target Description F56H6.3 /REP_DB=WormBase Gene ID /WP=CE16131 /TR=O45582 /GB=CAB04493.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060703 NCBI Caenorhabditis elegans F56H6.3 (F56H6.3) mRNA, complete cds. 11/11 None
F56H6.3 ENSEMBL cdna:known chromosome:CEL140:I:12297674:12298313:-1 gene:F56H6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044652 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021346 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026671 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12297604-12298244(-) 46.72 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.3
Entrez Gene 186414 Entrez gene
SwissProt O45582 EMBL-EBI
WormBase CE16131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04493 Hypothetical protein F56H6.3 [Caenorhabditis elegans] ref|NP_493104.1| F56H6.3 [Caenorhabditis elegans] 2.0E-59
blast CAB04101 Hypothetical protein F11D11.10 [Caenorhabditis elegans] ref|NP_507656.1| F11D11.10 [Caenorhabditis elegans] 5.0E-13
Sequence
Target Sequence 
>C. ELEGANS:177702_AT
atggcaattcgctcagtttccgatctttttttttggaaaattcaattttttagatcattt
atctcagcttttttggaaatttcacacttcaaaattttacttttcagattttcagctttt
gtacctttttcagtagtgaaacttccggttttttgtcaaattttctcgcacaattttcag
atttttttgactggctcccatgaggtcgccgcaaaggcgcctccgccggcctcagctgtc
gccgcgccggcctcacggcgtcattcacgccgcatgtatagtgaggtgcgtaaccgcgaa
cgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAATTCGCTCAGTTTCCGATC 363 53 13 Antisense
AATTCGCTCAGTTTCCGATCTTTTT 415 177 18 Antisense
GATCATTTATCTCAGCTTTTTTGGA 316 421 65 Antisense
TTTCAGCTTTTGTACCTTTTTCAGT 72 669 122 Antisense
ATTTTCTCGCACAATTTTCAGATTT 296 15 172 Antisense
TTCAGATTTTTTTGACTGGCTCCCA 475 687 188 Antisense
TTTTTTGACTGGCTCCCATGAGGTC 637 675 195 Antisense
CCATGAGGTCGCCGCAAAGGCGCCT 421 267 210 Antisense
TCACGGCGTCATTCACGCCGCATGT 188 627 265 Antisense
TCACGCCGCATGTATAGTGAGGTGC 62 625 277 Antisense
TGAGGTGCGTAACCGCGAACGTGTC 63 567 294 Antisense
Sequence Source Affymetrix Proprietary Database