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[177698_s_at]

Description T23G4.3 /REP_DB=WormBase Gene ID /WP=CE16455 /TR=O18125 /GB=CAB05283.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 54.1
(-1.2)
A 		44
(-3)
A 		71.5
(1.9)
A 		77.6
(3)
A 		34
B 53.8
(-1.6)
A 		38.9
(-3)
A 		58.1
(-1.2)
A 		103.4
(3)
M 		65
C 39.3
(-3)
A 		54.9
(-1.9)
A 		59.9
(-1.5)
A 		124.4
(3)
A 		85
avr 49.1
(-2.7) 		45.9
(-3) 		63.2
(-1.1) 		101.8
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 49.3
(-2.4)
A 		32.4
(-3)
A 		31.3
(-3)
A 		105.4
(-0.4)
A 		201.3
(3)
P 		173.9
(2)
P 		170
B 41.3
(-3)
A 		47.6
(-2.8)
A 		54.6
(-2.6)
A 		93.5
(-1.6)
A 		199.5
(1.3)
P 		263.4
(3)
P 		222
C 40
(-3)
A 		55.9
(-2.3)
A 		64
(-2)
A 		74
(-1.6)
A 		149.7
(1.5)
A 		185.6
(3)
P 		146
avr 43.5
(-3) 		45.3
(-2.9) 		50
(-2.8) 		91
(-1.3) 		183.5
(2.1) 		207.6
(3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 19.7
(3)
A 		9.6
(-3)
A 		18.7
(2.4)
A 		11.4
(-1.9)
A 		10
B 17.2
(0.7)
A 		9.6
(-3)
A 		13.5
(-1.1)
A 		22
(3)
M 		12
C 13
(-3)
A 		15.8
(-0.9)
A 		20.9
(2.9)
A 		21
(3)
A 		8
avr 16.6
(1.6) 		11.7
(-3) 		17.7
(2.6) 		18.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 9.1
(-2.7)
A 		11.5
(-2.5)
A 		6.8
(-3)
A 		26.7
(-0.8)
A 		60.7
(3)
P 		42.3
(1)
P 		54
B 14.4
(-2.9)
A 		15.8
(-2.8)
A 		13.3
(-3)
A 		24.8
(-2.2)
A 		81.1
(1.8)
P 		98.2
(3)
P 		85
C 14.8
(-3)
A 		17.1
(-2.7)
A 		16.3
(-2.8)
A 		14.9
(-3)
A 		48.4
(1.3)
A 		62.1
(3)
P 		47
avr 12.8
(-2.9) 		14.8
(-2.7) 		12.1
(-3) 		22.1
(-1.9) 		63.4
(2.6) 		67.5
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177698_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9688
Sequence Type Exemplar sequence
Representative Public ID T23G4.3 NCBI
Target Description T23G4.3 /REP_DB=WormBase Gene ID /WP=CE16455 /TR=O18125 /GB=CAB05283.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070244 NCBI Caenorhabditis elegans T23G4.3 (T23G4.3) mRNA, complete cds. 11/11 None
SNAP00000014425 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13685170:13686981:-1 11/11 None
GENEFINDER00000014429 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13685170:13686981:-1 11/11 None
T23G4.3 ENSEMBL cdna:known chromosome:CEL140:IV:13685112:13686981:-1 gene:T23G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13685175-13686987(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G4.3
Entrez Gene 178337 Entrez gene
SwissProt O18125 EMBL-EBI
WormBase CE16455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05283 Hypothetical protein T23G4.3 [Caenorhabditis elegans] ref|NP_502645.1| T23G4.3 [Caenorhabditis elegans] 0.0
blast CAB54490 Hypothetical protein Y87G2A.7 [Caenorhabditis elegans] ref|NP_493379.1| Y87G2A.7 [Caenorhabditis elegans] 1.0E-177
blast CAB54490 Hypothetical protein Y87G2A.7 [Caenorhabditis elegans] ref|NP_493379.1| Y87G2A.7 [Caenorhabditis elegans] 1.0E-170
blast CAE63552 Hypothetical protein CBG08038 [Caenorhabditis briggsae] 3.0E-98
Sequence
Target Sequence 
>C. ELEGANS:177698_S_AT
ttagtcgatatcattcttctcttcctgattcgtggccacaaagtcaaagtgtatctcccg
aaatattatgaggattttgtatcagattgtggagtatcgaaagttgatgatttgccgatt
acagaagcatacaattataaatggttcaacgttgtttctggtctcgcggatcgctctggc
gctgttttcgtctcttcggctgaatatcgtaccagcaaaacgccaatcgaatactcaaaa
tcgtccgaacgaatcattactccatgtttcttgaacgccgatgatcggctgatggtgttg
gatccaacgattcgttatagaaagaccggagagagcaactacacgaatatctcgtctgat
gaaatcctccaattcactgaccagggcgacgatcgtatgaagctcggcgagcaactgttc
ctcgaacatcaaatcgaattgatttgctccttgtgcaaactctacccggtgaaactgctc
aacaaagtagccatcaagcagctcttggagcttgtcgtttttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGTCGATATCATTCTTCTCTTCC 472 681 865 Antisense
TCTTCCTGATTCGTGGCCACAAAGT 150 617 884 Antisense
TGGTTCAACGTTGTTTCTGGTCTCG 546 547 1006 Antisense
TTTTCGTCTCTTCGGCTGAATATCG 297 677 1049 Antisense
TCGTCCGAACGAATCATTACTCCAT 313 605 1105 Antisense
TACTCCATGTTTCTTGAACGCCGAT 362 643 1122 Antisense
TCCTCCAATTCACTGACCAGGGCGA 533 593 1229 Antisense
GGGCGACGATCGTATGAAGCTCGGC 86 493 1248 Antisense
GGCGAGCAACTGTTCCTCGAACATC 459 541 1270 Antisense
AACTCTACCCGGTGAAACTGCTCAA 248 111 1322 Antisense
GCTCTTGGAGCTTGTCGTTTTTGCT 404 301 1365 Antisense
Sequence Source Affymetrix Proprietary Database