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[177697_at] 7TM receptor, srbc family

Description ZC455.9 /REP_DB=WormBase Gene ID /WP=CE06598 /TR=Q23339 /GB=CAA99960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 02      6grp_cgc > 50      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 12.9
(-2.5)
A 		3.9
(-3)
A 		20.9
(-2)
A 		107.3
(3)
A 		103
B 18.9
(-1.2)
A 		12.4
(-2.2)
A 		7.1
(-3)
A 		45.6
(3)
A 		39
C 2.9
(-3)
A 		4.3
(-2.8)
A 		4.1
(-2.8)
A 		48.1
(3)
A 		45
avr 11.6
(-2.5) 		6.9
(-3) 		10.7
(-2.6) 		67
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 57
(3)
A 		23.3
(-0.7)
A 		36.7
(0.8)
A 		7.6
(-2.5)
A 		16.1
(-1.5)
A 		2.8
(-3)
A 		54
B 9.8
(-1.9)
A 		22.5
(0.1)
A 		2.4
(-3)
A 		41.6
(3)
A 		28.6
(1)
A 		4.5
(-2.7)
A 		39
C 45.7
(3)
A 		21.5
(-0.4)
A 		22.8
(-0.2)
A 		35
(1.5)
A 		2.8
(-3)
A 		10.1
(-2)
A 		43
avr 37.5
(3) 		22.4
(0.1) 		20.6
(-0.2) 		28.1
(1.2) 		15.8
(-1.1) 		5.8
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.7
(-1.5)
A 		0.9
(-3)
A 		5.5
(-1.1)
A 		15.7
(3)
A 		15
B 6
(0.3)
A 		3.1
(-1.9)
A 		1.6
(-3)
A 		9.7
(3)
A 		8
C 0.9
(-3)
A 		1.2
(-2.8)
A 		1.4
(-2.6)
A 		8.1
(3)
A 		7
avr 3.9
(-1.6) 		1.7
(-3) 		2.8
(-2.3) 		11.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.5
(3)
A 		8.3
(1.7)
A 		8
(1.5)
A 		1.9
(-2.3)
A 		4.9
(-0.4)
A 		0.7
(-3)
A 		10
B 3.4
(-1.5)
A 		7.5
(0.8)
A 		0.6
(-3)
A 		11
(2.7)
A 		11.6
(3)
A 		1.7
(-2.4)
A 		11
C 16.9
(3)
A 		6.6
(-0.9)
A 		5.8
(-1.2)
A 		7
(-0.7)
A 		0.9
(-3)
A 		3.4
(-2.1)
A 		16
avr 10.3
(3) 		7.5
(1) 		4.8
(-0.9) 		6.6
(0.4) 		5.8
(-0.2) 		1.9
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13900
Sequence Type Exemplar sequence
Representative Public ID ZC455.9 NCBI
Target Description ZC455.9 /REP_DB=WormBase Gene ID /WP=CE06598 /TR=Q23339 /GB=CAA99960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073797 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-44) (srbc-44) mRNA, complete cds. 11/11 None
ZC455.9 ENSEMBL cdna:known chromosome:CEL140:V:12789859:12791141:-1 gene:ZC455.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034470 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034481 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12789858-12791141(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-44
Ensembl ZC455.9
Entrez Gene 191177 Entrez gene
SwissProt Q23339 EMBL-EBI
WormBase CE06598 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99960 Hypothetical protein ZC455.9 [Caenorhabditis elegans] ref|NP_506198.1| Serpentine Receptor, class BC (class B-like) family member (srbc-44) [Caenorhabditis elegans] 1.0E-150
blast CAA99961 Hypothetical protein ZC455.8 [Caenorhabditis elegans] ref|NP_506199.1| Serpentine Receptor, class BC (class B-like) family member (srbc-43) [Caenorhabditis elegans] 1.0E-109
blast CAE63998 Hypothetical protein CBG08592 [Caenorhabditis briggsae] 6.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.8E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506198.1 5 10-32,52-74,84-106,127-149,181-200
ZC455.9 5 10-32,52-74,84-106,127-149,181-200
Sequence
Target Sequence 
>C. ELEGANS:177697_AT
ttattatcctcaaacatcctgtccaccagatttttcctagctgctctgatttcgatagaa
agattaattgcagtatttttgcctgttcagtttcataataatcgtcaaaaactacctgtt
tttatatttttcactatgttacttttatggggaatgtttgaagacgttatgtatttttgg
atctgtgatatttctccattcataaaagattgctcagttctgggatgcacttataatgat
tgctttttgcaatactggactggtagtaaattggtaattggaggattcacttgcttaagc
tctttggttctctttttcaaacttttggcattgaaaaaaaccatgaatattgtcaattta
tcaaagacaaattacttatgtattggtgattcatgtttgactcttctatttgactttacg
ccatttcttttgacgcttgttctcagaacacaactttattctgcagacatctatgggcct
tacaatgctactgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTATCCTCAAACATCCTGTCCA 276 679 280 Antisense
AACATCCTGTCCACCAGATTTTTCC 654 137 292 Antisense
GATTTTTCCTAGCTGCTCTGATTTC 155 429 308 Antisense
GCAGTATTTTTGCCTGTTCAGTTTC 153 311 349 Antisense
GGATCTGTGATATTTCTCCATTCAT 68 513 458 Antisense
GATTGCTCAGTTCTGGGATGCACTT 96 435 487 Antisense
TAAGCTCTTTGGTTCTCTTTTTCAA 691 637 575 Antisense
GACTCTTCTATTTGACTTTACGCCA 352 371 678 Antisense
CTTTACGCCATTTCTTTTGACGCTT 75 221 693 Antisense
AACACAACTTTATTCTGCAGACATC 524 135 726 Antisense
ATGGGCCTTACAATGCTACTGCAAA 54 51 752 Antisense
Sequence Source Affymetrix Proprietary Database