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[177696_at]

Description C30H6.5 /REP_DB=WormBase Gene ID /WP=CE15649 /TR=O45277 /GB=CAB02811.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 72      6grp_total > 83      4grp_total > 48      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 19.9
(-3)
A 		324.3
(1.9)
P 		392.2
(3)
P 		87.9
(-1.9)
P 		372
B 21.5
(-3)
A 		335.1
(2)
P 		397.4
(3)
P 		53.1
(-2.5)
A 		376
C 43.7
(-3)
A 		314
(0.7)
P 		476.8
(3)
P 		106
(-2.1)
P 		433
avr 28.4
(-3) 		324.5
(1.5) 		422.1
(3) 		82.3
(-2.2) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 766
1 2 3 4 5 6 range
A 65.9
(-3)
P 		396.6
(0)
P 		194.4
(-1.8)
P 		624.7
(2.1)
P 		721.6
(3)
P 		310.4
(-0.8)
P 		656
B 39.4
(-3)
P 		361.7
(-0.5)
P 		205.4
(-1.7)
P 		562.9
(1.1)
P 		805.7
(3)
P 		331.8
(-0.7)
P 		766
C 58.9
(-3)
P 		325.3
(-0.8)
P 		205.1
(-1.8)
P 		574.2
(1.3)
P 		782.3
(3)
P 		340.7
(-0.7)
P 		723
avr 54.7
(-3) 		361.2
(-0.4) 		201.6
(-1.8) 		587.3
(1.5) 		769.9
(3) 		327.6
(-0.7) 		715
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 7.2
(-3)
A 		70.4
(1)
P 		102.5
(3)
P 		12.9
(-2.6)
P 		95
B 6.9
(-3)
A 		82.8
(2.3)
P 		92.1
(3)
P 		11.3
(-2.7)
A 		85
C 14.5
(-3)
A 		90.3
(-0)
P 		166.2
(3)
P 		17.9
(-2.9)
P 		152
avr 9.5
(-3) 		81.2
(0.9) 		120.3
(3) 		14
(-2.8) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 12.2
(-3)
P 		141.1
(0.8)
P 		42.3
(-2.1)
P 		158.4
(1.3)
P 		217.7
(3)
P 		75.6
(-1.1)
P 		206
B 13.7
(-3)
P 		120.4
(-1)
P 		49.9
(-2.3)
P 		149.1
(-0.4)
P 		327.3
(3)
P 		123.7
(-0.9)
P 		314
C 21.8
(-3)
P 		99.2
(-1)
P 		52.2
(-2.2)
P 		115.5
(-0.6)
P 		253.1
(3)
P 		114
(-0.6)
P 		231
avr 15.9
(-3) 		120.2
(-0.5) 		48.1
(-2.2) 		141
(0) 		266
(3) 		104.4
(-0.9) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9648
Sequence Type Exemplar sequence
Representative Public ID C30H6.5 NCBI
Target Description C30H6.5 /REP_DB=WormBase Gene ID /WP=CE15649 /TR=O45277 /GB=CAB02811.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070696 NCBI Caenorhabditis elegans C30H6.5 (C30H6.5) mRNA, complete cds. 11/11 None
SNAP00000029650 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17373609:17375362:1 11/11 None
GENEFINDER00000029663 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17369326:17375362:1 11/11 None
C30H6.5 ENSEMBL cdna:known chromosome:CEL140:IV:17371248:17375230:1 gene:C30H6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17371253-17375236(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30H6.5
Entrez Gene 183068 Entrez gene
SwissProt O45277 EMBL-EBI
WormBase CE15649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02811 Hypothetical protein C30H6.5 [Caenorhabditis elegans] ref|NP_503097.1| C30H6.5 [Caenorhabditis elegans] 0.0
blast CAE57440 Hypothetical protein CBG00402 [Caenorhabditis briggsae] 0.0
blast CAB02811 Hypothetical protein C30H6.5 [Caenorhabditis elegans] ref|NP_503097.1| C30H6.5 [Caenorhabditis elegans] 1.0E-170
blast CAE57440 Hypothetical protein CBG00402 [Caenorhabditis briggsae] 1.0E-155
blast CAD42644 Hypothetical protein C30H6.10 [Caenorhabditis elegans] ref|NP_741499.1| C30H6.10 [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
scop a.3.1.Di-heme cytochrome c peroxidase All alpha proteins; Cytochrome c; Cytochrome c; Di-heme cytochrome c peroxidase 1.79999995231628
Pfam IPR003014 EMBL-EBI N/apple PAN 2.2E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 3.2E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 2.5E-14
Pfam IPR003014 EMBL-EBI N/apple PAN 1.9E-6
Pfam IPR003014 EMBL-EBI N/apple PAN 3.2E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 1.6E-9
Pfam IPR003014 EMBL-EBI N/apple PAN 2.2E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 3.2E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 2.5E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503097.1 1 54-73
C30H6.5 1 54-73
Sequence
Target Sequence 
>C. ELEGANS:177696_AT
agaaaacttggccggttgcttcattaaaactcctaaccgtattcttcataagtttgagga
atctaggataggaggagtcacattggagacttgtatgaggcagtgcgctcaaagtttgca
aaacttctattgtgcctcgatcaactatagtttcgggttaaagatttgtattttgaatgg
cgggaacctgcatttgaacggaggagacactttggtgggatcaagagagtttgattattt
tgaaaatacttgccagccaagaagcaccacaacaacagaatcttcgattggaggttcagg
tactaagaaagagtgctatcggctgtataataactcaatatacaactcatttgacgcgac
cattgttgggggactccaggatttagagagctgtgagtccgagtgctcttggtctcacat
tcgtcgtcgtgagaagtgtcttggagtgaactggatacctacgacacgcggatgcatgtt
gttccacaaacaaatcgatttcaatgttctacaaccttcgttcaaagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAAACTTGGCCGGTTGCTTCATT 437 71 957 Antisense
TAAAACTCCTAACCGTATTCTTCAT 497 637 981 Antisense
GAGGCAGTGCGCTCAAAGTTTGCAA 234 405 1053 Antisense
AACTTCTATTGTGCCTCGATCAACT 543 139 1078 Antisense
GGCGGGAACCTGCATTTGAACGGAG 77 535 1135 Antisense
ACTCATTTGACGCGACCATTGTTGG 23 99 1301 Antisense
GAGCTGTGAGTCCGAGTGCTCTTGG 530 387 1344 Antisense
TTGGTCTCACATTCGTCGTCGTGAG 677 701 1365 Antisense
TGAACTGGATACCTACGACACGCGG 553 571 1403 Antisense
ACGACACGCGGATGCATGTTGTTCC 399 91 1417 Antisense
GTTCTACAACCTTCGTTCAAAGCAC 572 441 1462 Antisense
Sequence Source Affymetrix Proprietary Database