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[177695_at]

Description F48F7.3 /REP_DB=WormBase Gene ID /WP=CE05890 /TR=Q20575 /GB=CAA93493.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 25      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 18.4
(3)
A 		17.8
(2.6)
A 		8.5
(-3)
A 		9.7
(-2.3)
A 		10
B 3.2
(-3)
A 		18.1
(1)
A 		25.7
(3)
A 		8.5
(-1.6)
A 		23
C 7.8
(-3)
A 		15.5
(-1.8)
A 		10.2
(-2.6)
A 		46.9
(3)
A 		39
avr 9.8
(-3) 		17.1
(0.7) 		14.8
(-0.5) 		21.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 51.7
(-2)
A 		9.6
(-3)
A 		88
(-1.1)
P 		258.2
(3)
P 		150.2
(0.4)
P 		8.7
(-3)
A 		250
B 52.6
(-2.3)
A 		58.6
(-2.2)
A 		69.4
(-1.9)
A 		237.3
(3)
P 		138
(0.1)
P 		29.9
(-3)
A 		207
C 27.4
(-2.6)
A 		75
(-1.7)
A 		9.4
(-3)
A 		307
(3)
P 		119
(-0.8)
P 		35.9
(-2.5)
A 		298
avr 43.9
(-2.5) 		47.7
(-2.4) 		55.6
(-2.2) 		267.5
(3) 		135.7
(-0.3) 		24.8
(-3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.7
(3)
A 		3.9
(-0.2)
A 		2.2
(-2.1)
A 		1.4
(-3)
A 		5
B 1
(-3)
A 		4.5
(1.2)
A 		6
(3)
A 		1.8
(-2)
A 		5
C 2.6
(-3)
A 		4.5
(-0.8)
A 		3.5
(-2)
A 		7.9
(3)
A 		5
avr 3.4
(-3) 		4.3
(3) 		3.9
(0.3) 		3.7
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 9.5
(-2.3)
A 		3.4
(-2.9)
A 		19.2
(-1.4)
P 		65.5
(3)
P 		45.3
(1.1)
P 		2.1
(-3)
A 		63
B 18.3
(-2.2)
A 		19.5
(-2)
A 		16.8
(-2.3)
A 		62.9
(3)
P 		56.1
(2.2)
P 		11.1
(-3)
A 		52
C 10.2
(-2.2)
A 		22.9
(-0.9)
A 		2.4
(-3)
A 		61.7
(3)
P 		38.5
(0.7)
P 		12
(-2)
A 		59
avr 12.7
(-2.5) 		15.3
(-2.2) 		12.8
(-2.5) 		63.4
(3) 		46.6
(1.2) 		8.4
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17798
Sequence Type Exemplar sequence
Representative Public ID F48F7.3 NCBI
Target Description F48F7.3 /REP_DB=WormBase Gene ID /WP=CE05890 /TR=Q20575 /GB=CAA93493.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077923 NCBI Caenorhabditis elegans F48F7.3 (F48F7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000000624 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13960195:13965620:1 11/11 None
SNAP00000000613 ENSEMBL cdna:SNAP chromosome:CEL140:X:13963613:13965620:1 11/11 None
F48F7.3 ENSEMBL cdna:known chromosome:CEL140:X:13964354:13965620:1 gene:F48F7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13964353-13965620(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48F7.3
Entrez Gene 185989 Entrez gene
SwissProt Q20575 EMBL-EBI
WormBase CE05890 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93493 Hypothetical protein F48F7.3 [Caenorhabditis elegans] ref|NP_510324.1| F48F7.3 [Caenorhabditis elegans] 1.0E-142
blast CAE63060 Hypothetical protein CBG07338 [Caenorhabditis briggsae] 1.0E-123
blast CAA93492 Hypothetical protein F48F7.2 [Caenorhabditis elegans] ref|NP_510323.3| SYNtaxin family member (syn-2) [Caenorhabditis elegans] sp|Q20574|STX2_CAEEL Putative syntaxin syn-2 1.0E-122
blast CAE63060 Hypothetical protein CBG07338 [Caenorhabditis briggsae] 1.0E-121
blast CAE63060 Hypothetical protein CBG07338 [Caenorhabditis briggsae] 1.0E-96
blast ABB36429 RE75106p [Drosophila melanogaster] gb|AAF47918.1| CG11357-PA [Drosophila melanogaster] ref|NP_647916.1| CG11357-PA [Drosophila melanogaster] 6.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.8E-75
Pfam IPR006011 EMBL-EBI Syntaxin, N-terminal 5.9E-16
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.8E-75
Pfam IPR000727 EMBL-EBI Target SNARE coiled-coil domain 4.0E-18
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.8E-75
Sequence
Target Sequence 
>C. ELEGANS:177695_AT
aatgcagacatggtcccaagttattactaaaaattgatgacgatgtgcatattgacatga
ttggcttgcaattcttaattaagcggtatagcgtgatggacgatttcatggcatgtcgag
tgatttcaaacgggcaagttgtgagaaataacacgtccaaatggtacttatcaaagaaag
attacaagtttccgaatttgggaacttattgtcagggaatggtgtattttattagcggga
acttattgccaattcttcacggaaatatcgagaagtcgcagtttttatggatggatgact
ggtacgtcacccgatcattggtaggagattataaaatcagttattactccttggaacagc
attcgatttctccaaacacagttcgtgaagtgtattcaagtttaatggctatcaaaactc
gaaaatggaggaccatctttgctcattttcggccaccccagaaattcccgatgtaccgcc
gacggaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAGACATGGTCCCAAGTTATT 401 165 206 Antisense
GCGTGATGGACGATTTCATGGCATG 567 291 296 Antisense
CATGGCATGTCGAGTGATTTCAAAC 458 209 312 Antisense
GGAACTTATTGCCAATTCTTCACGG 528 529 443 Antisense
GAAGTCGCAGTTTTTATGGATGGAT 33 337 477 Antisense
GATGGATGACTGGTACGTCACCCGA 413 407 495 Antisense
GTACGTCACCCGATCATTGGTAGGA 342 459 507 Antisense
TTACTCCTTGGAACAGCATTCGATT 353 683 549 Antisense
GCATTCGATTTCTCCAAACACAGTT 536 305 564 Antisense
TGGAGGACCATCTTTGCTCATTTTC 104 551 631 Antisense
TCCCGATGTACCGCCGACGGAAAAT 258 595 671 Antisense
Sequence Source Affymetrix Proprietary Database