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[177694_at]

Description E01G4.5 /REP_DB=WormBase Gene ID /WP=CE23623 /TR=O17740 /GB=CAB05717.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 716
1 2 3 4 range
A 392.4
(-0.8)
P 		301.2
(-1.6)
P 		143.7
(-3)
P 		821.3
(3)
P 		678
B 454.2
(-0.3)
P 		316.9
(-1.6)
P 		168.5
(-3)
P 		792.1
(3)
P 		624
C 383.3
(-0.9)
P 		333.7
(-1.3)
P 		133.3
(-3)
P 		849.5
(3)
P 		716
avr 410
(-0.7) 		317.3
(-1.5) 		148.5
(-3) 		821
(3) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 489.7
(3)
P 		422.4
(1.2)
P 		265.8
(-3)
P 		310.1
(-1.8)
P 		334.2
(-1.2)
P 		472.6
(2.5)
P 		224
B 485.4
(2.3)
P 		423.8
(0.9)
P 		260.6
(-3)
P 		347.7
(-0.9)
P 		386
(-0)
P 		512.8
(3)
P 		252
C 465.9
(2.7)
P 		385.7
(0.6)
P 		249
(-3)
P 		346.1
(-0.4)
P 		344.3
(-0.5)
P 		475.8
(3)
P 		227
avr 480.3
(2.8) 		410.6
(1) 		258.5
(-3) 		334.6
(-1) 		354.8
(-0.5) 		487.1
(3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 142.9
(3)
P 		65.4
(-1.4)
P 		37.6
(-3)
P 		120.2
(1.7)
P 		105
B 144.9
(1.9)
P 		78.3
(-1.2)
P 		39
(-3)
P 		168.8
(3)
P 		130
C 126.9
(2)
P 		95.9
(0.1)
P 		46.4
(-3)
P 		143.2
(3)
P 		97
avr 138.2
(2.7) 		79.9
(-0.7) 		41
(-3) 		144.1
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 90.3
(-0.9)
P 		150.2
(3)
P 		57.9
(-3)
P 		78.7
(-1.6)
P 		100.9
(-0.2)
P 		115.1
(0.7)
P 		92
B 168.9
(2)
P 		141.1
(0.6)
P 		63.3
(-3)
P 		92.1
(-1.6)
P 		156.8
(1.4)
P 		191.2
(3)
P 		128
C 172.7
(3)
P 		117.7
(-0)
P 		63.4
(-3)
P 		69.6
(-2.7)
P 		111.4
(-0.4)
P 		159.3
(2.3)
P 		109
avr 144
(2.3) 		136.3
(1.8) 		61.5
(-3) 		80.1
(-1.8) 		123
(0.9) 		155.2
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4010
Sequence Type Exemplar sequence
Representative Public ID E01G4.5 NCBI
Target Description E01G4.5 /REP_DB=WormBase Gene ID /WP=CE23623 /TR=O17740 /GB=CAB05717.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064434 NCBI Caenorhabditis elegans E01G4.5 (E01G4.5) mRNA, complete cds. 11/11 None
SNAP00000016571 ENSEMBL cdna:SNAP chromosome:CEL140:II:13470537:13473808:1 11/11 None
GENEFINDER00000016574 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13472438:13473808:1 11/11 None
E01G4.5 ENSEMBL cdna:known chromosome:CEL140:II:13472327:13473819:1 gene:E01G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13472428-13473816(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E01G4.5
Entrez Gene 174989 Entrez gene
SwissProt O17740 EMBL-EBI
WormBase CE23623 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05717 Hypothetical protein E01G4.5 [Caenorhabditis elegans] ref|NP_496835.1| E01G4.5 [Caenorhabditis elegans] 0.0
blast CAB05717 Hypothetical protein E01G4.5 [Caenorhabditis elegans] ref|NP_496835.1| E01G4.5 [Caenorhabditis elegans] 1.0E-174
blast CAB03918 Hypothetical protein C25F9.2 [Caenorhabditis elegans] ref|NP_507780.1| C25F9.2 [Caenorhabditis elegans] 1.0E-86
blast CAB03918 Hypothetical protein C25F9.2 [Caenorhabditis elegans] ref|NP_507780.1| C25F9.2 [Caenorhabditis elegans] 1.0E-83
blast CAB03918 Hypothetical protein C25F9.2 [Caenorhabditis elegans] ref|NP_507780.1| C25F9.2 [Caenorhabditis elegans] 9.0E-66
blast AAM97998 Hypothetical protein K09F6.10 [Caenorhabditis elegans] ref|NP_740974.1| K09F6.10 [Caenorhabditis elegans] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:177694_AT
gcaaagagcgacgccacggatgagcacaaaagtacctccgagttgaagatggccaaacag
cttctagaagccgccgggatggacaccgaacaggaagttcacgatcgttcagatcttgca
aggttggcctcacacattcatgagtatcagatcaagctgtggacttgtaatggacgtcaa
cccgttgcatacatagatgccgagtacaaccccgagggtaccaaattcatagggctcttc
ttttatgatggtcactacgaggttgtggatcacatccgtgggaaaaagggcgcacatttc
tgtgacaagtgctaccagtttgtcgagaagaatcacgctaagaattgtgagaaaaaatgt
agaagctgtgggcactttgagtgcggtcaacaagaaaaagacgtagtttgtgacacctgt
aacgtgacattcaaaaaccagatgtgttatgataaccacctcaagaaagtttcacagcag
gcccttcctcattgtgagaaatgttttgtgtgccgtgattgtgggagactggaccaaacc
gcgcgcttcagaggtcattggcttcatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGAGCGACGCCACGGATGAGC 221 317 568 Antisense
AGTACCTCCGAGTTGAAGATGGCCA 85 63 598 Antisense
GCTTCTAGAAGCCGCCGGGATGGAC 561 303 627 Antisense
TGCAAGGTTGGCCTCACACATTCAT 705 575 684 Antisense
ATGGACGTCAACCCGTTGCATACAT 237 53 737 Antisense
GGTACCAAATTCATAGGGCTCTTCT 369 503 784 Antisense
GGGCTCTTCTTTTATGATGGTCACT 475 493 799 Antisense
GAGGTTGTGGATCACATCCGTGGGA 585 403 826 Antisense
CAGGCCCTTCCTCATTGTGAGAAAT 492 207 1045 Antisense
TGTGGGAGACTGGACCAAACCGCGC 602 555 1087 Antisense
GCTTCAGAGGTCATTGGCTTCATAC 305 305 1112 Antisense
Sequence Source Affymetrix Proprietary Database