[Home] | [Total List]

[177692_at]

Description R11A8.1 /REP_DB=WormBase Gene ID /WP=CE06299 /TR=Q21923 /GB=CAA94366.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 06      6grp_total > 86      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 94.1
(-2.9)
P 		91.7
(-3)
A 		114.8
(-2)
P 		235.3
(3)
P 		144
B 105
(-2.1)
P 		91.3
(-3)
P 		95.1
(-2.8)
P 		187.5
(3)
P 		96
C 85.1
(-2.9)
P 		86.9
(-2.8)
A 		80.7
(-3)
P 		292.9
(3)
P 		212
avr 94.7
(-2.8) 		90
(-3) 		96.9
(-2.7) 		238.6
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 55
(-3)
P 		107.9
(-2.1)
P 		107.1
(-2.1)
P 		195.8
(-0.6)
P 		266.7
(0.5)
P 		413.6
(3)
P 		359
B 66.8
(-2.7)
A 		80.2
(-2.5)
P 		50.2
(-3)
P 		195.3
(-0.4)
P 		236.4
(0.3)
P 		389.5
(3)
P 		339
C 65
(-2.9)
P 		60.6
(-3)
P 		93.3
(-2.2)
P 		138.7
(-1)
P 		194.5
(0.4)
P 		293.9
(3)
P 		233
avr 62.3
(-3) 		82.9
(-2.6) 		83.5
(-2.6) 		176.6
(-0.7) 		232.5
(0.4) 		365.7
(3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 34.3
(3)
P 		19.9
(-3)
A 		30
(1.2)
P 		34.4
(3)
P 		15
B 33.5
(0.8)
P 		22.5
(-2.8)
P 		22
(-3)
P 		40
(3)
P 		18
C 28.2
(-2.2)
P 		25
(-3)
A 		28.1
(-2.2)
P 		49.4
(3)
P 		24
avr 32
(0) 		22.5
(-3) 		26.7
(-1.7) 		41.3
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 10.1
(-3)
P 		38.4
(-1.1)
P 		23.3
(-2.1)
P 		49.7
(-0.4)
P 		80.5
(1.7)
P 		100.7
(3)
P 		91
B 23.2
(-2.5)
A 		26.7
(-2.3)
P 		12.2
(-3)
P 		51.7
(-1.2)
P 		96.1
(0.8)
P 		145.3
(3)
P 		133
C 24.1
(-2.6)
P 		18.5
(-3)
P 		23.7
(-2.6)
P 		27.9
(-2.3)
P 		62.9
(0.3)
P 		98.4
(3)
P 		80
avr 19.1
(-3) 		27.9
(-2.4) 		19.7
(-3) 		43.1
(-1.5) 		79.8
(0.8) 		114.8
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9959
Sequence Type Exemplar sequence
Representative Public ID R11A8.1 NCBI
Target Description R11A8.1 /REP_DB=WormBase Gene ID /WP=CE06299 /TR=Q21923 /GB=CAA94366.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069508 NCBI Caenorhabditis elegans R11A8.1 (R11A8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000003256 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10354984:10357134:-1 11/11 None
R11A8.1 ENSEMBL cdna:known chromosome:CEL140:IV:10355095:10357134:-1 gene:R11A8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003241 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10355100-10357140(-) 98.85 100.0
Public Domain and Genome References
Gene Title
Ensembl R11A8.1
Entrez Gene 187798 Entrez gene
SwissProt Q21923 EMBL-EBI
WormBase CE06299 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94366 Hypothetical protein R11A8.1 [Caenorhabditis elegans] ref|NP_501909.1| R11A8.1 [Caenorhabditis elegans] 0.0
blast CAE70866 Hypothetical protein CBG17654 [Caenorhabditis briggsae] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:177692_AT
atacagattttcttcttccactgcttcaactcgctggtaatgacaaaatcagcgaagtat
acgaaatcgaaaagttctatgtggaacagttcataccagcattggaaaattggactaatt
atcgtgaaaatccaacggaattcttcgacaccaacgctgataagttcgaggagtactatg
agaatgagatgaaaatcgaaacacctttatcgccgaatcccgagatttttccgtttcaga
ttgaacttcgaaatagaaaaaaaatcgaaaaggaaattgctgatgtagcagaaaaccaaa
tcagaagaatagaagaaaactttcgtaatccattcattgcaccttttgcctttttcccgt
atcagaataattttcaaatggcccctcagaatgttccagggcctagtttatacaatcctt
atcctgtccaggccaatccggctccaaatatcccattcaatgtatatcaaaacattccgt
tcaacctgtatttcaactcgtacacacctttcgtgaatccatttctcaaccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACAGATTTTCTTCTTCCACTGCT 285 25 1055 Antisense
CACTGCTTCAACTCGCTGGTAATGA 8 199 1073 Antisense
TCGAAACACCTTTATCGCCGAATCC 450 599 1250 Antisense
GAATCCCGAGATTTTTCCGTTTCAG 442 327 1269 Antisense
TTTCGTAATCCATTCATTGCACCTT 182 671 1375 Antisense
TTTGCCTTTTTCCCGTATCAGAATA 314 669 1399 Antisense
ATGGCCCCTCAGAATGTTCCAGGGC 95 53 1432 Antisense
TATACAATCCTTATCCTGTCCAGGC 111 661 1463 Antisense
AACATTCCGTTCAACCTGTATTTCA 260 139 1525 Antisense
TTCAACTCGTACACACCTTTCGTGA 295 669 1546 Antisense
TTTCGTGAATCCATTTCTCAACCCT 275 669 1563 Antisense
Sequence Source Affymetrix Proprietary Database