[Home] | [Total List]

[177691_at] G-protein coupled receptor, srg family

Description C53A5.8 /REP_DB=WormBase Gene ID /WP=CE08957 /TR=O17699 /GB=CAB03988.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 18      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 12.6
(-2.4)
A 		7.8
(-3)
A 		37.1
(0.5)
A 		57.6
(3)
A 		50
B 26.9
(-0.3)
A 		55.5
(3)
P 		3.1
(-3)
A 		42
(1.5)
P 		52
C 23.1
(-2.9)
A 		31.5
(-1.7)
A 		22.7
(-3)
A 		64.6
(3)
P 		42
avr 20.9
(-3) 		31.6
(-1.1) 		21
(-3) 		54.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 43.6
(3)
A 		30.1
(1)
A 		4.7
(-2.6)
A 		23.2
(0.1)
A 		28
(0.7)
A 		2.1
(-3)
A 		42
B 29.1
(0.5)
P 		34.9
(1.3)
A 		33.9
(1.2)
P 		46.7
(3)
A 		39.4
(2)
A 		4.9
(-3)
A 		42
C 31.2
(1.6)
A 		39.1
(3)
P 		12
(-1.8)
A 		5.2
(-3)
A 		25.1
(0.5)
A 		13.1
(-1.6)
A 		34
avr 34.6
(3) 		34.7
(3) 		16.9
(-0.8) 		25
(0.9) 		30.8
(2.2) 		6.7
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.6
(-0.8)
A 		1.7
(-3)
A 		9.7
(3)
A 		8.4
(2)
A 		8
B 8.6
(0.6)
A 		13.7
(3)
P 		0.7
(-3)
A 		9
(0.8)
P 		13
C 7.6
(-3)
A 		9.1
(-0.3)
A 		7.9
(-2.5)
A 		10.9
(3)
P 		3
avr 6.9
(-1.5) 		8.2
(0.8) 		6.1
(-3) 		9.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8
(1.4)
A 		10.7
(3)
A 		1
(-2.7)
A 		5.9
(0.2)
A 		8.4
(1.6)
A 		0.5
(-3)
A 		10
B 10.1
(0.5)
P 		11.6
(1.1)
A 		8.2
(-0.3)
P 		12.4
(1.5)
A 		16
(3)
A 		1.8
(-3)
A 		14
C 11.6
(2.8)
A 		11.9
(3)
P 		3.1
(-1.8)
A 		1
(-3)
A 		8.1
(0.9)
A 		4.4
(-1.1)
A 		11
avr 9.9
(2) 		11.4
(3) 		4.1
(-1.8) 		6.4
(-0.3) 		10.8
(2.6) 		2.2
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13593
Sequence Type Exemplar sequence
Representative Public ID C53A5.8 NCBI
Target Description C53A5.8 /REP_DB=WormBase Gene ID /WP=CE08957 /TR=O17699 /GB=CAB03988.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074203(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074203 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-47) (srg-47) mRNA, complete cds. 10/11 None
GENEFINDER00000009302 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14557569:14561507:-1 10/11 None
C53A5.8 ENSEMBL cdna:known chromosome:CEL140:V:14557569:14558876:-1 gene:C53A5.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009291 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14557568-14558876(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-47
Ensembl C53A5.8
Entrez Gene 183738 Entrez gene
SwissProt O17699 EMBL-EBI
WormBase CE33042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03989 Hypothetical protein C53A5.9 [Caenorhabditis elegans] ref|NP_506605.1| C53A5.9 [Caenorhabditis elegans] 0.0
blast CAB03988 Hypothetical protein C53A5.8 [Caenorhabditis elegans] ref|NP_506604.2| Serpentine Receptor, class G (gamma) family member (srg-47) [Caenorhabditis elegans] sp|O17699|SRG47_CAEEL Serpentine receptor class gamma-47 (Protein srg-47) 1.0E-162
blast CAB03988 Hypothetical protein C53A5.8 [Caenorhabditis elegans] ref|NP_506604.2| Serpentine Receptor, class G (gamma) family member (srg-47) [Caenorhabditis elegans] sp|O17699|SRG47_CAEEL Serpentine receptor class gamma-47 (Protein srg-47) 1.0E-148
blast CAB03987 Hypothetical protein C53A5.6 [Caenorhabditis elegans] ref|NP_506602.1| C53A5.6 [Caenorhabditis elegans] 2.0E-96
blast NP_503750 Serpentine Receptor, class G (gamma) family member (srg-58) [Caenorhabditis elegans] gb|AAF39949.1| Serpentine receptor, class g (gamma) protein 58 [Caenorhabditis elegans] 4.0E-43
blast NP_872224 Serpentine Receptor, class G (gamma) family member (srg-65) [Caenorhabditis elegans] gb|AAO26002.1| Serpentine receptor, class g (gamma) protein 65 [Caenorhabditis elegans] 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 1.6E-8
Pfam IPR006652 EMBL-EBI Kelch repeat 1.3E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 4.4E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 5.1E-7
Pfam IPR006652 EMBL-EBI Kelch repeat 4.1E-16
Pfam IPR006652 EMBL-EBI Kelch repeat 7.6E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506604.2 5 20-42,142-160,187-209,228-250,270-292
C53A5.8 5 20-42,142-160,187-209,228-250,270-292
GENEFINDER00000009302 5 579-598,611-630,659-681,700-722,742-764
Sequence
Target Sequence 
>C. ELEGANS:177691_AT
tcggttttaccgttagaatcacataggattgaaatggaaaatggtactcttatagagata
agtaatcacagcatgacgacttggacattgaacatatatgctatttattcatcagtttac
tttataattctacttttagttggcattatatcaatattttacatcagtcgaaaagttgaa
cgtaagtttcgaatgctaaaaaattacggtagagtttttgtcaaatttttaaccgagacg
aaggaacgaaataatttgggaaaaaagttggcaaatctcgggcaaagcttactgttagaa
gtctcaacaagaagccgggaagttgcaagaaaattgtcacttataactcttgtctatgga
ttcctctattctggaattcttctatggagcattttaatggctcttaatcgttattttcaa
ttctgtcctccatcatttggatatatctttaacatgtctttaggaatctcgtctgatttg
atcaccctatcacttccttatatcttgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGTTTTACCGTTAGAATCACATA 470 603 478 Antisense
ATCACAGCATGACGACTTGGACATT 138 27 542 Antisense
GGCAAATCTCGGGCAAAGCTTACTG 92 531 747 Antisense
AATTGTCACTTATAACTCTTGTCTA 45 179 809 Antisense
TAACTCTTGTCTATGGATTCCTCTA 651 637 821 Antisense
GGATTCCTCTATTCTGGAATTCTTC 618 507 835 Antisense
ATCGTTATTTTCAATTCTGTCCTCC 7 37 884 Antisense
AATTCTGTCCTCCATCATTTGGATA 404 177 896 Antisense
AACATGTCTTTAGGAATCTCGTCTG 601 137 928 Antisense
ATCTCGTCTGATTTGATCACCCTAT 510 33 943 Antisense
CCTATCACTTCCTTATATCTTGTTG 352 269 963 Antisense
Sequence Source Affymetrix Proprietary Database