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[177690_at]

Description ZK593.2 /REP_DB=WormBase Gene ID /WP=CE06623 /TR=Q23540 /GB=CAA93425.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_total > 92      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 826
1 2 3 4 range
A 186
(-2.6)
P 		132.7
(-3)
P 		143.5
(-2.9)
P 		920
(3)
P 		787
B 222.1
(-2.1)
P 		167.7
(-2.7)
P 		140.4
(-3)
P 		664.4
(3)
P 		524
C 179.8
(-2.4)
P 		208.7
(-2.2)
P 		94.2
(-3)
P 		916.4
(3)
P 		822
avr 196
(-2.4) 		169.7
(-2.6) 		126
(-3) 		833.6
(3) 		708

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 350.5
(2.8)
P 		236.5
(-1.3)
P 		189
(-3)
P 		300.5
(1)
P 		357
(3)
P 		224.5
(-1.7)
P 		168
B 291
(0.3)
P 		328.8
(1.4)
P 		179.3
(-3)
M 		240.3
(-1.2)
P 		381.3
(3)
P 		215.7
(-1.9)
P 		202
C 214
(-3)
P 		328.9
(3)
P 		213.3
(-3)
P 		327.4
(2.9)
A 		256.6
(-0.8)
P 		226.2
(-2.3)
P 		116
avr 285.2
(1) 		298.1
(1.5) 		193.9
(-3) 		289.4
(1.2) 		331.6
(3) 		222.1
(-1.8) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 67.7
(-0.8)
P 		28.8
(-3)
P 		37.5
(-2.5)
P 		134.7
(3)
P 		106
B 70.8
(-0.9)
P 		41.4
(-2.5)
P 		32.5
(-3)
P 		141.6
(3)
P 		109
C 59.5
(-1.7)
P 		60
(-1.7)
P 		32.8
(-3)
P 		154.5
(3)
P 		122
avr 66
(-1.3) 		43.4
(-2.5) 		34.3
(-3) 		143.6
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 64.6
(-0.9)
P 		84.1
(0.9)
P 		41.2
(-3)
P 		76.2
(0.2)
P 		107.7
(3)
P 		54.7
(-1.8)
P 		67
B 101.3
(0.1)
P 		109.4
(0.5)
P 		43.6
(-3)
M 		63.6
(-1.9)
P 		154.9
(3)
P 		80.4
(-1)
P 		111
C 79.3
(0.3)
P 		100.3
(3)
P 		54.3
(-3)
P 		65.8
(-1.5)
A 		83
(0.7)
P 		75.7
(-0.2)
P 		46
avr 81.7
(0.1) 		97.9
(1.5) 		46.4
(-3) 		68.5
(-1.1) 		115.2
(3) 		70.3
(-0.9) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9515
Sequence Type Exemplar sequence
Representative Public ID ZK593.2 NCBI
Target Description ZK593.2 /REP_DB=WormBase Gene ID /WP=CE06623 /TR=Q23540 /GB=CAA93425.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069629 NCBI Caenorhabditis elegans ZK593.2 (ZK593.2) mRNA, complete cds. 11/11 None
ZK593.2 ENSEMBL cdna:known chromosome:CEL140:IV:10913072:10914459:1 gene:ZK593.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042092 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042102 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10913077-10914465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK593.2
Entrez Gene 191354 Entrez gene
SwissProt Q23540 EMBL-EBI
WormBase CE06623 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93425 Hypothetical protein ZK593.2 [Caenorhabditis elegans] ref|NP_502030.1| ZK593.2 [Caenorhabditis elegans] 1.0E-104
blast CAE61957 Hypothetical protein CBG05957 [Caenorhabditis briggsae] 9.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502030.1 2 25-47,54-73
ZK593.2 2 25-47,54-73
Sequence
Target Sequence 
>C. ELEGANS:177690_AT
gaacaactgaccacctcgtgggaagatatccgatcacagttcagtttccaacaacacgca
tcacaattacatttctatttgtttttgctccttttcttttttttaattttcactttctca
tggccagcaccaacacaattgtcgaaaatgatcaattcctcgttgctttgtgtttttctg
tgcatcctgatctctgctccattcacaaggtctcgtccttctgaagagcatccaatgtac
acagcagctcgtcttactgatgagtacaagcatattcttgatggaaagattaagctcgcc
gaaagccacattttcacagatgatgtcacagttgacgattgcggaaaaggaggaaacttt
gattatctttctgataagcttgactctttaattccaacactcagtgaaatcaatgtatct
gtgaagtttgcgtaccctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAACTGACCACCTCGTGGGAAG 238 351 25 Antisense
GATATCCGATCACAGTTCAGTTTCC 199 425 49 Antisense
TTCAGTTTCCAACAACACGCATCAC 425 685 64 Antisense
TTTAATTTTCACTTTCTCATGGCCA 369 673 126 Antisense
TGGCCAGCACCAACACAATTGTCGA 43 545 145 Antisense
ATCAATTCCTCGTTGCTTTGTGTTT 672 25 175 Antisense
GGTCTCGTCCTTCTGAAGAGCATCC 347 503 233 Antisense
GTACACAGCAGCTCGTCTTACTGAT 10 461 261 Antisense
GATTAAGCTCGCCGAAAGCCACATT 434 429 312 Antisense
GCTTGACTCTTTAATTCCAACACTC 401 307 402 Antisense
ATCTGTGAAGTTTGCGTACCCTGTT 161 35 441 Antisense
Sequence Source Affymetrix Proprietary Database