[Home] | [Total List]

[177689_at]

Description F56H6.9 /REP_DB=WormBase Gene ID /WP=CE25916 /TR=O45587 /GB=CAB04498.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 24.5
(-0.8)
A 		15.7
(-1.7)
A 		4.1
(-3)
A 		58.5
(3)
A 		54
B 21.2
(3)
A 		17.1
(1.4)
A 		13.1
(-0.1)
A 		5.7
(-3)
A 		16
C 10.3
(-3)
A 		31.9
(1.7)
A 		10.2
(-3)
A 		37.9
(3)
A 		28
avr 18.7
(-0.7) 		21.6
(0) 		9.1
(-3) 		34
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 37.9
(3)
A 		7.7
(-2.3)
A 		3.6
(-3)
A 		37.8
(3)
A 		9.5
(-2)
A 		31.2
(1.8)
A 		34
B 28.6
(-1.4)
A 		60.9
(3)
A 		16.8
(-3)
A 		21.5
(-2.4)
A 		35.3
(-0.5)
A 		41.4
(0.3)
A 		44
C 6.9
(-3)
A 		20.7
(-1.4)
A 		13.1
(-2.3)
A 		58.9
(3)
A 		10.2
(-2.6)
A 		35.8
(0.3)
A 		52
avr 24.5
(-0.2) 		29.8
(1) 		11.2
(-3) 		39.4
(3) 		18.3
(-1.5) 		36.1
(2.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.9
(3)
A 		3.4
(-1.2)
A 		1.1
(-3)
A 		8.6
(2.8)
A 		8
B 6.8
(3)
A 		4.2
(0.2)
A 		3
(-1.1)
A 		1.2
(-3)
A 		6
C 3.4
(-3)
A 		9.2
(3)
A 		3.6
(-2.8)
A 		6.4
(0.1)
A 		6
avr 6.4
(3) 		5.6
(1.7) 		2.6
(-3) 		5.4
(1.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7
(1.2)
A 		2.7
(-1.7)
A 		0.8
(-3)
A 		9.6
(3)
A 		2.9
(-1.6)
A 		7.6
(1.6)
A 		9
B 9.9
(-0.9)
A 		20.3
(3)
A 		4.1
(-3)
A 		5.7
(-2.4)
A 		14.3
(0.8)
A 		15.5
(1.2)
A 		16
C 2.5
(-3)
A 		6.3
(-0.6)
A 		3.3
(-2.5)
A 		11.8
(2.9)
A 		3.3
(-2.5)
A 		12
(3)
A 		10
avr 6.5
(-0.5) 		9.8
(1.7) 		2.7
(-3) 		9
(1.2) 		6.8
(-0.3) 		11.7
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2325
Sequence Type Exemplar sequence
Representative Public ID F56H6.9 NCBI
Target Description F56H6.9 /REP_DB=WormBase Gene ID /WP=CE25916 /TR=O45587 /GB=CAB04498.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060709
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000044659 ENSEMBL cdna:SNAP chromosome:CEL140:I:12311721:12315288:1 9/11 None
F56H6.9 ENSEMBL cdna:known chromosome:CEL140:I:12311673:12315427:1 gene:F56H6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060709 7/11 Cross Hyb Matching Probes None
GENEFINDER00000044665 7/11 Cross Hyb Matching Probes None
GENEFINDER00000044663 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12311603-12315358(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56H6.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04498 Hypothetical protein F56H6.9 [Caenorhabditis elegans] ref|NP_493110.2| F56H6.9 [Caenorhabditis elegans] 0.0
blast CAB04496 Hypothetical protein F56H6.7 [Caenorhabditis elegans] ref|NP_493108.2| F56H6.7 [Caenorhabditis elegans] 0.0
blast CAB04026 Hypothetical protein E03H4.4 [Caenorhabditis elegans] ref|NP_493147.2| E03H4.4 [Caenorhabditis elegans] 0.0
blast T22803 hypothetical protein F56H6.10 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
F56H6.9 1 20-41
SNAP00000044659 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:177689_AT
gaagcccaaatgttgaaccatctcgggaaaagtgtttcagatttctactacattcccaca
agtgaaatcgagtactatgcaaatctcatgagaattttctatcaagccaacctattcttg
gaaatcgctatgaatcgattcattagatcagttgatcatcaaatatcactccaaggtgca
tgcagctatctctgggtagaagaagatcgtcagcactggccagatttctataatcaggat
cttgtcgccttgcatcccgtgaaacccagcttgttcaaaactgcgggggaggacaggaaa
acatattgtgcaacggttattcaaacttgggcggacattgtgttcggcggatctacaaac
tacactgttaaggatatcctgaggcaaataactatcaatatgcccacacacctaacatgc
caaatgtcctacatcatcacagatgctatcgtcgggacaaaagcctctcggaagaaatgg
aattttaagagaaaattgaatggatgttcggcaccaggggattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCCAAATGTTGAACCATCTCG 208 345 2113 Antisense
ATTTTCTATCAAGCCAACCTATTCT 126 13 2206 Antisense
AAGGTGCATGCAGCTATCTCTGGGT 654 159 2285 Antisense
AGATCGTCAGCACTGGCCAGATTTC 509 65 2316 Antisense
TAATCAGGATCTTGTCGCCTTGCAT 539 635 2343 Antisense
TCCCGTGAAACCCAGCTTGTTCAAA 371 595 2367 Antisense
CGGACATTGTGTTCGGCGGATCTAC 313 243 2444 Antisense
CCCACACACCTAACATGCCAAATGT 171 259 2515 Antisense
TCATCACAGATGCTATCGTCGGGAC 234 619 2546 Antisense
GTCGGGACAAAAGCCTCTCGGAAGA 271 467 2563 Antisense
TGGATGTTCGGCACCAGGGGATTGC 506 549 2613 Antisense
Sequence Source Affymetrix Proprietary Database