[Home] | [Total List]

[177688_at]

Description T21H8.5 /REP_DB=WormBase Gene ID /WP=CE18956 /TR=Q94075 /GB=CAB01770.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 33      6grp_total > 20      4grp_total > 53      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 135.1
(1.9)
P 		150.1
(3)
A 		95
(-0.9)
A 		64.7
(-3)
A 		85
B 165
(3)
P 		111.3
(-1.2)
P 		104
(-1.8)
P 		89
(-3)
A 		76
C 111
(-2)
P 		111.8
(-1.9)
M 		134.2
(3)
M 		106.6
(-3)
P 		28
avr 137
(3) 		124.4
(1.5) 		111.1
(-0.1) 		86.8
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 60.3
(-3)
A 		148.3
(3)
P 		93.1
(-0.8)
A 		113.6
(0.6)
A 		70.7
(-2.3)
A 		88.7
(-1.1)
A 		88
B 102.2
(3)
P 		96.4
(1.9)
A 		97.2
(2.1)
A 		95.6
(1.7)
A 		81.3
(-1)
A 		70.6
(-3)
A 		32
C 95.1
(0.6)
A 		103.4
(1.9)
A 		108.8
(2.8)
A 		88.3
(-0.5)
A 		72.9
(-3)
A 		110.2
(3)
P 		37
avr 85.9
(-1.4) 		116
(3) 		99.7
(0.6) 		99.2
(0.5) 		75
(-3) 		89.8
(-0.8) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 49.2
(3)
P 		32.6
(0.5)
A 		24.8
(-0.7)
A 		9.5
(-3)
A 		40
B 52.6
(3)
P 		27.5
(-1.5)
P 		24.1
(-2.1)
P 		19
(-3)
A 		34
C 36.7
(0.9)
P 		32.1
(-0.1)
M 		46.8
(3)
M 		18
(-3)
P 		29
avr 46.2
(3) 		30.7
(-0) 		31.9
(0.2) 		15.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 11.1
(-3)
A 		52.7
(3)
P 		20.3
(-1.7)
A 		28.8
(-0.4)
A 		21.3
(-1.5)
A 		21.6
(-1.5)
A 		42
B 35.6
(3)
P 		32.1
(1.3)
A 		23.6
(-3)
A 		25.3
(-2.2)
A 		33
(1.7)
A 		26.3
(-1.7)
A 		12
C 35.2
(2.5)
A 		31.6
(1.3)
A 		27.7
(0.1)
A 		17.8
(-3)
A 		23.6
(-1.2)
A 		36.9
(3)
P 		19
avr 27.3
(-1.6) 		38.8
(3) 		23.9
(-3) 		24
(-3) 		26
(-2.2) 		28.3
(-1.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17717
Sequence Type Exemplar sequence
Representative Public ID T21H8.5 NCBI
Target Description T21H8.5 /REP_DB=WormBase Gene ID /WP=CE18956 /TR=Q94075 /GB=CAB01770.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077911 NCBI Caenorhabditis elegans T21H8.5 (T21H8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000010202 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13874559:13880935:-1 11/11 None
T21H8.5 ENSEMBL cdna:known chromosome:CEL140:X:13876429:13880935:-1 gene:T21H8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010194 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13876428-13880935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21H8.5
Entrez Gene 3565900 Entrez gene
SwissProt Q94075 EMBL-EBI
WormBase CE18956 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01770 Hypothetical protein T21H8.5 [Caenorhabditis elegans] ref|NP_510312.1| T21H8.5 [Caenorhabditis elegans] 8.0E-67
blast CAB01770 Hypothetical protein T21H8.5 [Caenorhabditis elegans] ref|NP_510312.1| T21H8.5 [Caenorhabditis elegans] 1.0E-65
blast CAE63072 Hypothetical protein CBG07357 [Caenorhabditis briggsae] 1.0E-50
blast CAE63072 Hypothetical protein CBG07357 [Caenorhabditis briggsae] 4.0E-50
Sequence
Target Sequence 
>C. ELEGANS:177688_AT
gttttgccgaagccaaccaacttctctcatcagccttggaacagttggacgatataattc
ggaatggaaattcaacttcacgaagtacaacaacgattggctcggctgggcccacgccaa
tcatcaaaaagtcgtttcgagaccttctcccaccgccgccagctctcaggtcgacatttt
cgccgagaataatggaaaatggtcattcgaatcttgctcacaagcagcacattaatgatg
atatcgacaatgggaatgcagatgatgagcgatctagtcgcgagataaatcgacagtgga
tcagcacagattggaagcacagaacagacttgggttccgacggttcatcaggagttgaat
cgccaccatcagatcttccaacttcttcatcatcactgttcagcccgccacgtgtctacc
aggaatttgtgaaagcaattgacgagcaaacaatgacggagagacccgatttggaaactc
gactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGCCGAAGCCAACCAACTTCT 579 447 20 Antisense
CTTCTCTCATCAGCCTTGGAACAGT 178 221 40 Antisense
CAACAACGATTGGCTCGGCTGGGCC 385 189 107 Antisense
GGCCCACGCCAATCATCAAAAAGTC 573 541 128 Antisense
CTCTCAGGTCGACATTTTCGCCGAG 166 229 182 Antisense
AATGGTCATTCGAATCTTGCTCACA 163 163 217 Antisense
AATCTTGCTCACAAGCAGCACATTA 389 169 229 Antisense
CAGACTTGGGTTCCGACGGTTCATC 424 205 344 Antisense
ATCAGGAGTTGAATCGCCACCATCA 307 29 366 Antisense
CCATCAGATCTTCCAACTTCTTCAT 448 271 385 Antisense
GAGACCCGATTTGGAAACTCGACTG 270 393 480 Antisense
Sequence Source Affymetrix Proprietary Database