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[177685_s_at]

Description F44E5.1 /REP_DB=WormBase Gene ID /WP=CE18676 /TR=Q9XU97 /GB=CAB05509.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 28      6grp_total > 61      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4865
1 2 3 4 range
A 9578.5
(-3)
P 		11944.5
(1.1)
P 		13040.6
(3)
P 		10061.7
(-2.2)
P 		3462
B 9852.7
(-1.8)
P 		10500.9
(-0.7)
P 		12743.3
(3)
P 		9100.1
(-3)
P 		3643
C 8932.5
(-1.5)
P 		10829.1
(2.3)
P 		11155.9
(3)
P 		8175.9
(-3)
P 		2980
avr 9454.6
(-2.4) 		11091.5
(0.7) 		12313.3
(3) 		9112.6
(-3) 		3201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5882
1 2 3 4 5 6 range
A 9376
(-1.8)
P 		9793.1
(-1.1)
P 		10883.5
(0.5)
P 		12498
(3)
P 		10057.8
(-0.7)
P 		8572.2
(-3)
P 		3926
B 9796.9
(-0.1)
P 		9999.3
(0.1)
P 		12468.9
(3)
P 		11032.6
(1.3)
P 		9646.6
(-0.3)
P 		7307
(-3)
P 		5162
C 10745.6
(-0.3)
P 		9650.6
(-1.7)
P 		13189.1
(3)
P 		12569.2
(2.2)
P 		10891.6
(-0.1)
P 		8685.3
(-3)
P 		4504
avr 9972.8
(-0.3) 		9814.3
(-0.6) 		12180.5
(3) 		12033.3
(2.8) 		10198.7
(0) 		8188.2
(-3) 		3992
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2510
1 2 3 4 range
A 3487.5
(3)
P 		2592.8
(0.3)
P 		3409.1
(2.8)
P 		1472.8
(-3)
P 		2015
B 3141.9
(3)
P 		2593.5
(0.3)
P 		2952.9
(2.1)
P 		1939.2
(-3)
P 		1203
C 2956.9
(0.8)
P 		3113.4
(1.1)
P 		3888.2
(3)
P 		1378.6
(-3)
P 		2510
avr 3195.4
(2.3) 		2766.6
(0.9) 		3416.7
(3) 		1596.9
(-3) 		1820

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2255
1 2 3 4 5 6 range
A 1728.4
(-3)
P 		3482.9
(3)
P 		2370.2
(-0.8)
P 		3169.8
(1.9)
P 		3035
(1.5)
P 		2087.1
(-1.8)
P 		1755
B 3408.9
(0.4)
P 		3328.3
(0)
P 		3027.8
(-1.5)
P 		2922.2
(-2)
P 		3919.3
(3)
P 		2724.7
(-3)
P 		1195
C 3982.9
(3)
P 		2944.7
(-1.3)
P 		3356.9
(0.4)
P 		2527.7
(-3)
P 		3524.4
(1.1)
P 		2907.5
(-1.4)
P 		1455
avr 3040.1
(0) 		3252
(1.4) 		2918.3
(-0.7) 		2873.2
(-1) 		3492.9
(3) 		2573.1
(-3) 		920
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177685_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2701
Sequence Type Exemplar sequence
Representative Public ID F44E5.1 NCBI
Target Description F44E5.1 /REP_DB=WormBase Gene ID /WP=CE18676 /TR=Q9XU97 /GB=CAB05509.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064112(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064112 NCBI Caenorhabditis elegans F44E5.1 (F44E5.1) mRNA, complete cds. 11/11 None
SNAP00000031916 ENSEMBL cdna:SNAP chromosome:CEL140:II:11774179:11774464:-1 11/11 None
GENEFINDER00000031923 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11774179:11774464:-1 11/11 None
F44E5.1.2 ENSEMBL cdna:known chromosome:CEL140:II:11773711:11774464:-1 gene:F44E5.1 11/11 None
F44E5.1.3 ENSEMBL cdna:known chromosome:CEL140:II:11773954:11774464:-1 gene:F44E5.1 11/11 None
F44E5.1.1 ENSEMBL cdna:known chromosome:CEL140:II:11774042:11774466:-1 gene:F44E5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11774175-11774461(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44E5.1
Entrez Gene 174807 Entrez gene
SwissProt Q9XU97 EMBL-EBI
WormBase CE18676 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05509 Hypothetical protein F44E5.1 [Caenorhabditis elegans] ref|NP_496513.1| F44E5.1 [Caenorhabditis elegans] 8.0E-24
blast CAE59698 Hypothetical protein CBG03126 [Caenorhabditis briggsae] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:177685_S_AT
gcaatcaatcgtccaaaccaagagactctacctcaacccacacgagcatttcggacgtgc
caacatctgccgtgccgccctcttgagctacgttgggatgtactacatgttcaagtggaa
ccagaacagaaaggccgaaattgcccgcgccgagagaaaagctgccaaggccatcgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCAATCGTCCAAACCAAGAGA 542 321 39 Antisense
CAAACCAAGAGACTCTACCTCAACC 406 189 52 Antisense
TCAACCCACACGAGCATTTCGGACG 452 631 71 Antisense
GCATTTCGGACGTGCCAACATCTGC 139 309 84 Antisense
CGCCCTCTTGAGCTACGTTGGGATG 626 255 114 Antisense
GAGCTACGTTGGGATGTACTACATG 32 387 123 Antisense
GATGTACTACATGTTCAAGTGGAAC 429 409 135 Antisense
GTGGAACCAGAACAGAAAGGCCGAA 225 485 153 Antisense
CAGAAAGGCCGAAATTGCCCGCGCC 467 201 165 Antisense
TTGCCCGCGCCGAGAGAAAAGCTGC 145 699 179 Antisense
AGAAAAGCTGCCAAGGCCATCGCCA 359 73 193 Antisense
Sequence Source Affymetrix Proprietary Database