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[177684_s_at]

Description C01F6.8 /REP_DB=WormBase Gene ID /WP=CE17360 /TR=Q17564 /GB=CAA92573.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 75      6grp_total > 27      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 1055.9
(-0.7)
P 		958.5
(-3)
P 		982.9
(-2.4)
P 		1217.1
(3)
P 		259
B 1125.1
(1.8)
P 		1043.3
(-3)
P 		1069.9
(-1.4)
P 		1144.9
(3)
P 		102
C 1138.9
(3)
P 		1091
(-0.7)
P 		1063
(-2.8)
P 		1061
(-3)
P 		78
avr 1106.6
(1.1) 		1030.9
(-3) 		1038.6
(-2.6) 		1141
(3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 1001.8
(3)
P 		888.9
(-0.1)
P 		846.4
(-1.2)
P 		812.3
(-2.2)
P 		875.7
(-0.4)
P 		782
(-3)
P 		220
B 1129.1
(3)
P 		899.7
(-0)
P 		985.9
(1.1)
P 		677.3
(-3)
P 		834.8
(-0.9)
P 		1012.9
(1.5)
P 		452
C 961.2
(2.4)
P 		937.2
(1.9)
P 		744.3
(-1.8)
P 		948.7
(2.1)
P 		683.9
(-3)
P 		993.4
(3)
P 		310
avr 1030.7
(3) 		908.6
(-0.1) 		858.9
(-1.4) 		812.8
(-2.6) 		798.1
(-3) 		929.4
(0.4) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 384.5
(3)
P 		208.1
(-2.1)
P 		256.9
(-0.7)
P 		178.2
(-3)
P 		206
B 358.8
(3)
P 		257.7
(-2.3)
P 		247.9
(-2.8)
P 		244
(-3)
P 		115
C 377
(3)
P 		313.7
(1.1)
P 		370.5
(2.8)
P 		178.9
(-3)
P 		198
avr 373.4
(3) 		259.8
(-0.9) 		291.8
(0.2) 		200.4
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 184.7
(-3)
P 		316.1
(3)
P 		184.3
(-3)
P 		206
(-2)
P 		264.3
(0.6)
P 		190.4
(-2.7)
P 		132
B 392.9
(3)
P 		299.5
(0.4)
P 		239.4
(-1.3)
P 		179.4
(-3)
P 		339.2
(1.5)
P 		377.7
(2.6)
P 		214
C 356.3
(3)
P 		286
(0.5)
P 		189.4
(-3)
P 		190.8
(-2.9)
P 		221.3
(-1.9)
P 		332.6
(2.1)
P 		167
avr 311.3
(3) 		300.5
(2.5) 		204.4
(-2.4) 		192.1
(-3) 		274.9
(1.2) 		300.2
(2.4) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177684_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8786
Sequence Type Exemplar sequence
Representative Public ID C01F6.8 NCBI
Target Description C01F6.8 /REP_DB=WormBase Gene ID /WP=CE17360 /TR=Q17564 /GB=CAA92573.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026116(11), NM_001026117(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026116 NCBI Caenorhabditis elegans ICLn ion channel homolog family member (icl-1) (icl-1) mRNA, complete cds. 11/11 None
NM_001026117 NCBI Caenorhabditis elegans ICLn ion channel homolog family member (icl-1) (icl-1) mRNA, complete cds. 10/11 None
SNAP00000031434 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9095050:9095625:-1 9/11 None
GENEFINDER00000031444 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9095050:9095625:-1 9/11 None
C01F6.8a ENSEMBL cdna:known chromosome:CEL140:IV:9094546:9095633:-1 gene:C01F6.8 11/11 None
C01F6.8b ENSEMBL cdna:known chromosome:CEL140:IV:9094563:9095635:-1 gene:C01F6.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9094690-9095631(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01F6.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21589 Hypothetical protein C01F6.8b [Caenorhabditis elegans] emb|CAD21675.1| Hypothetical protein C01F6.8b [Caenorhabditis elegans] ref|NP_001021288.1| ICLn ion channel homolog family member (icl-1) [Caenorhabditis elegans] gb|AAK69382.1| ICln2 [Caenorhabditis elegans] 2.0E-87
blast CAA92442 Hypothetical protein C01F6.8a [Caenorhabditis elegans] emb|CAA92573.1| Hypothetical protein C01F6.8a [Caenorhabditis elegans] ref|NP_001021287.1| ICLn ion channel homolog family member (icl-1) [Caenorhabditis elegans] gb|AAK69381.1| ICln1 [Caenorhabditis elegans] 1.0E-79
blast CAA92442 Hypothetical protein C01F6.8a [Caenorhabditis elegans] emb|CAA92573.1| Hypothetical protein C01F6.8a [Caenorhabditis elegans] ref|NP_001021287.1| ICLn ion channel homolog family member (icl-1) [Caenorhabditis elegans] gb|AAK69381.1| ICln1 [Caenorhabditis elegans] 4.0E-78
blast CAD21589 Hypothetical protein C01F6.8b [Caenorhabditis elegans] emb|CAD21675.1| Hypothetical protein C01F6.8b [Caenorhabditis elegans] ref|NP_001021288.1| ICLn ion channel homolog family member (icl-1) [Caenorhabditis elegans] gb|AAK69382.1| ICln2 [Caenorhabditis elegans] 5.0E-76
blast CAD21589 Hypothetical protein C01F6.8b [Caenorhabditis elegans] emb|CAD21675.1| Hypothetical protein C01F6.8b [Caenorhabditis elegans] ref|NP_001021288.1| ICLn ion channel homolog family member (icl-1) [Caenorhabditis elegans] gb|AAK69382.1| ICln2 [Caenorhabditis elegans] 5.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR003521 EMBL-EBI Nucleotide-sensitive chloride conductance regulator 1.8E-50
Pfam IPR003521 EMBL-EBI Nucleotide-sensitive chloride conductance regulator 5.5E-37
Sequence
Target Sequence 
>C. ELEGANS:177684_S_AT
gattctcactgaagtcagccagccaactgaaggaatcaagcttgccacaaccaatgtaca
ggctttcttcaagattgactcacttggaaacggaaccctttacattaccgatagtgcagt
tatctggatcagctcggccgctggaacaaaaggattttcggttgcctatccagcaattgt
tcttcatgccatatccactgacgtctccgttttcccatcagaacacatatttgtcatggt
tgatcagcggaagtcaggcttggaacttgctgctgcagagctcgaagacgaagaaagtga
tgatgatgaggaagaaccagcacttgaaatccgttttgttccagatgacaaggattcatt
aagccaaatttaccatcaaatcgctgttggacaagaggaaaatccagaagaagacgatcc
tatgtatgacgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCACTGAAGTCAGCCAGCCA 387 431 15 Antisense
GAATCAAGCTTGCCACAACCAATGT 588 327 47 Antisense
CAACCAATGTACAGGCTTTCTTCAA 404 185 62 Antisense
GAACCCTTTACATTACCGATAGTGC 511 345 107 Antisense
TGCAGTTATCTGGATCAGCTCGGCC 240 579 129 Antisense
GATTTTCGGTTGCCTATCCAGCAAT 604 429 167 Antisense
AATTGTTCTTCATGCCATATCCACT 299 179 189 Antisense
TCCGTTTTCCCATCAGAACACATAT 298 595 220 Antisense
GTCAGGCTTGGAACTTGCTGCTGCA 159 467 267 Antisense
GAACCAGCACTTGAAATCCGTTTTG 225 345 328 Antisense
AAGACGATCCTATGTATGACGACGA 614 149 425 Antisense
Sequence Source Affymetrix Proprietary Database