[Home] | [Total List]

[177683_at]

Description F35E2.7 /REP_DB=WormBase Gene ID /WP=CE17776 /TR=O62227 /GB=CAB04285.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 56.6
(3)
A 		54.7
(2.8)
A 		10.5
(-3)
A 		36
(0.3)
A 		46
B 21.7
(-3)
A 		84.4
(3)
A 		49.4
(-0.3)
A 		52.2
(-0.1)
A 		63
C 52.8
(0.1)
A 		95.2
(3)
A 		6.8
(-3)
A 		58.9
(0.5)
A 		88
avr 43.7
(-0.7) 		78.1
(3) 		22.2
(-3) 		49
(-0.1) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 70.2
(3)
A 		23.9
(-1.4)
A 		31.2
(-0.7)
A 		8.7
(-2.9)
A 		7.4
(-3)
A 		36.1
(-0.3)
A 		63
B 23.9
(-1.6)
A 		10.5
(-3)
A 		27.8
(-1.2)
A 		68.3
(3)
A 		43.8
(0.5)
A 		32
(-0.8)
A 		58
C 28.9
(-1.5)
A 		71.9
(3)
A 		22.4
(-2.2)
A 		14.6
(-3)
A 		41.7
(-0.2)
A 		36.5
(-0.7)
P 		57
avr 41
(3) 		35.4
(0.6) 		27.1
(-3) 		30.5
(-1.5) 		31
(-1.3) 		34.9
(0.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 20.6
(3)
A 		11.9
(0.1)
A 		2.7
(-3)
A 		5.3
(-2.1)
A 		18
B 6.9
(-3)
A 		20.8
(3)
A 		11.5
(-1)
A 		11.1
(-1.2)
A 		14
C 17.5
(0.6)
A 		27.4
(3)
A 		2.4
(-3)
A 		9.9
(-1.2)
A 		25
avr 15
(0.9) 		20
(3) 		5.5
(-3) 		8.8
(-1.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.9
(3)
A 		8.5
(0.5)
A 		6.8
(-0.4)
A 		2.2
(-3)
A 		2.2
(-3)
A 		8.8
(0.7)
A 		11
B 8.3
(-1)
A 		3.5
(-3)
A 		6.8
(-1.6)
A 		18.1
(3)
A 		17.8
(2.9)
A 		11.9
(0.5)
A 		15
C 10.7
(-0.5)
A 		22
(3)
A 		5.7
(-2.1)
A 		2.9
(-3)
A 		13.5
(0.3)
A 		12.2
(-0.1)
P 		19
avr 10.6
(2.1) 		11.3
(3) 		6.4
(-3) 		7.7
(-1.4) 		11.2
(2.9) 		11
(2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2311
Sequence Type Exemplar sequence
Representative Public ID F35E2.7 NCBI
Target Description F35E2.7 /REP_DB=WormBase Gene ID /WP=CE17776 /TR=O62227 /GB=CAB04285.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060584 NCBI Caenorhabditis elegans F35E2.7 (F35E2.7) mRNA, complete cds. 11/11 None
GENEFINDER00000041144 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11722950:11725738:-1 11/11 None
SNAP00000041131 ENSEMBL cdna:SNAP chromosome:CEL140:I:11723078:11732367:-1 11/11 None
F35E2.7 ENSEMBL cdna:known chromosome:CEL140:I:11723078:11725738:-1 gene:F35E2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11723008-11725669(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35E2.7
Entrez Gene 185289 Entrez gene
SwissProt O62227 EMBL-EBI
WormBase CE17776 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04285 Hypothetical protein F35E2.7 [Caenorhabditis elegans] ref|NP_492985.1| F35E2.7 [Caenorhabditis elegans] 0.0
blast CAB04287 Hypothetical protein F35E2.6 [Caenorhabditis elegans] ref|NP_492984.1| F35E2.6 [Caenorhabditis elegans] 0.0
blast CAB04108 Hypothetical protein F14B6.5 [Caenorhabditis elegans] ref|NP_493089.2| F14B6.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 5.5E-44
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 2.0E-89
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 8.5E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492985.1 10 13-30,40-59,79-101,139-161,173-195,254-276,283-300,310-332,339-361,366-388
F35E2.7 10 13-30,40-59,79-101,139-161,173-195,254-276,283-300,310-332,339-361,366-388
GENEFINDER00000041144 10 13-30,40-59,79-101,139-161,173-195,254-276,283-300,310-332,339-361,366-388
SNAP00000041131 11 840-862,894-911,921-940,960-982,1020-1042,1054-1076,1135-1157,1164-1181,1191-1213,1220-1242,1247-1269
Sequence
Target Sequence 
>C. ELEGANS:177683_AT
caagtatgaaactccaggcccacttgcatggtgcagtcatcagggtctaaatgcaacctc
aaagtacaagttaatgatcattggaaatagttggtcagcaaatcatggcaccatgtttca
tcaagaatgtggttataaagcaaacactatcatacagggatcatacccaagtaagctaat
aatgtatatatctatcggtgatccgataccaacaaatcttcttgcatttctatcaagtac
caagtacatggtttacattctgaatgccttgccagcacacgatttaaatcagacagagaa
tattggaaaatggctaaaagaaggggtaaatcctgttgaagttgagaggcgcttgggtga
tgaggtaggcaagccgtacaaacaggcgacctacgaaatggcccggaaaagatatgcgga
actagtgacagaatgtaatgggcggtgtgctctggtggactacaagcttgaattctataa
caatgccactgacacctacaaattatttgatgacagaggattcgaatacttcacctctgg
attacacttgtcaccacatggactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTATGAAACTCCAGGCCCACTT 525 181 1305 Antisense
TCATGGCACCATGTTTCATCAAGAA 130 623 1407 Antisense
GATCCGATACCAACAAATCTTCTTG 228 417 1504 Antisense
TACATTCTGAATGCCTTGCCAGCAC 356 645 1558 Antisense
GCCTTGCCAGCACACGATTTAAATC 375 279 1570 Antisense
GAATGTAATGGGCGGTGTGCTCTGG 514 331 1735 Antisense
GGTGTGCTCTGGTGGACTACAAGCT 681 497 1748 Antisense
ATAACAATGCCACTGACACCTACAA 461 25 1781 Antisense
AGGATTCGAATACTTCACCTCTGGA 93 57 1821 Antisense
TTCACCTCTGGATTACACTTGTCAC 392 687 1834 Antisense
TACACTTGTCACCACATGGACTGGA 625 641 1847 Antisense
Sequence Source Affymetrix Proprietary Database